Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16e04
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.7  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -3

Query: 215 TPWTVCSRGRGPGGAPTRV 159
           TP T  S  RGPGG PT V
Sbjct: 392 TPCTP-SPPRGPGGVPTSV 409


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 708 RDGLVSAPAWSFGARFPSRAAT 643
           R+GL+    W +G  F S  AT
Sbjct: 154 RNGLLPLLVWIYGGGFMSGTAT 175


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 173 PPPAPAPGYRQSMVSSRMIIGGA 241
           PPP   PG   S   S+M+I  A
Sbjct: 46  PPPGGPPGAPPSQNPSQMMISPA 68


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 708 RDGLVSAPAWSFGARFPSRAAT 643
           R+GL+    W +G  F S  AT
Sbjct: 154 RNGLLPLLVWIYGGGFMSGTAT 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,764
Number of Sequences: 438
Number of extensions: 4285
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)