Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16e03
         (919 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    24   1.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.9  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.9  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.9  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   5.1  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = -2

Query: 774 WKLKDYSFSSNFKRSRQIRE---NYTI 703
           WK  DY F S+ KR   I+    NYT+
Sbjct: 35  WKYIDYDFGSDEKRQAAIQSGDYNYTM 61


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +2

Query: 572 LRYLNNLINAMKLLFSTYNSGTTHFSNND 658
           L+  NN+   + + ++ +NS     SNN+
Sbjct: 517 LKAFNNVPKKLNMFYNNFNSDIKSISNNE 545


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -2

Query: 774 WKLKDYSFSSNFKRSRQIRE-NYTIADN 694
           WK  DY+F S+ KR   I+   Y   +N
Sbjct: 38  WKYFDYNFGSDEKRQAAIQSGEYNYKNN 65


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +2

Query: 572 LRYLNNLINAMKLLFSTYNSGTTHFSNND 658
           L+  NN+   + + ++ +NS     SNN+
Sbjct: 517 LKAFNNVPKKLNMFYNNFNSDIKSISNNE 545


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -1

Query: 454 CISCFLKLHNPFQHFYPNAKESNVFRAYVCC 362
           C+  F    NP  +   + K  N F+  +CC
Sbjct: 315 CLYYFSTTINPILYNLMSIKYRNAFKQTICC 345


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 774 WKLKDYSFSSNFKRSRQIR 718
           WK  DY F S+ KR   I+
Sbjct: 41  WKYIDYDFGSDEKRQAAIQ 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,493
Number of Sequences: 438
Number of extensions: 5933
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)