Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16d24
(767 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB039903-1|BAB17050.1| 842|Homo sapiens interferon-responsive f... 34 0.64
BC108311-1|AAI08312.1| 697|Homo sapiens LEPRE1 protein protein. 33 1.5
AK075418-1|BAC11608.1| 736|Homo sapiens protein ( Homo sapiens ... 33 1.5
AK027697-1|BAB55305.1| 736|Homo sapiens protein ( Homo sapiens ... 33 1.5
AK027680-1|BAB55291.1| 736|Homo sapiens protein ( Homo sapiens ... 33 1.5
AK027648-1|BAB55264.1| 804|Homo sapiens protein ( Homo sapiens ... 33 1.5
AF097432-1|AAG31019.1| 736|Homo sapiens GROS1-L protein protein. 33 1.5
BC130511-1|AAI30512.1| 98|Homo sapiens late cornified envelope... 31 6.0
BC130507-1|AAI30508.1| 98|Homo sapiens late cornified envelope... 31 6.0
BC127252-1|AAI27253.1| 136|Homo sapiens keratin associated prot... 31 6.0
BC087854-1|AAH87854.1| 98|Homo sapiens late cornified envelope... 31 6.0
AL161636-2|CAI19557.1| 98|Homo sapiens novel small proline ric... 31 6.0
AJ406934-1|CAC27573.1| 136|Homo sapiens keratin associated prot... 31 6.0
CR457273-1|CAG33554.1| 410|Homo sapiens PHF10 protein. 30 7.9
BC110323-1|AAI10324.1| 410|Homo sapiens PHD finger protein 10 p... 30 7.9
BC020954-1|AAH20954.1| 408|Homo sapiens PHD finger protein 10 p... 30 7.9
AL513547-3|CAI12316.1| 410|Homo sapiens PHD finger protein 10 p... 30 7.9
AK001837-1|BAA91934.1| 410|Homo sapiens protein ( Homo sapiens ... 30 7.9
AF338735-1|AAK27451.1| 410|Homo sapiens hypothetical PHD zinc f... 30 7.9
>AB039903-1|BAB17050.1| 842|Homo sapiens interferon-responsive
finger protein 1 long form protein.
Length = 842
Score = 33.9 bits (74), Expect = 0.64
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 80 RMQWLCVNIVDVLTFWT*GAELTRRVRRCASIVSRQRFLSFVMITKVTREV 232
RM +C + DV ++W LTRR RR + + +R+ S M +K+ V
Sbjct: 313 RMLRVCRELTDVQSYWAIQGSLTRRERRASGVRTRRSQGSSAMASKILLNV 363
>BC108311-1|AAI08312.1| 697|Homo sapiens LEPRE1 protein protein.
Length = 697
Score = 32.7 bits (71), Expect = 1.5
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +1
Query: 175 CESTEVSFFRND-----NKGYPGSVIMSAHDC*PVHPQNGNDEPRRRDQLDKKFLRRAYD 339
C T + FF ND N Y +++ H + P+ E R+R L+K+ L AYD
Sbjct: 323 CAKTYLLFFPNDEVMNQNLAYYAAMLGEEHTR-SIGPRESAKEYRQRSLLEKELLFFAYD 381
Query: 340 AHGLP 354
G+P
Sbjct: 382 VFGIP 386
>AK075418-1|BAC11608.1| 736|Homo sapiens protein ( Homo sapiens
cDNA PSEC0109 fis, clone NT2RP2005671, highly similar to
Leucine proline-enriched proteoglycan (leprecan) 1. ).
Length = 736
Score = 32.7 bits (71), Expect = 1.5
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +1
Query: 175 CESTEVSFFRND-----NKGYPGSVIMSAHDC*PVHPQNGNDEPRRRDQLDKKFLRRAYD 339
C T + FF ND N Y +++ H + P+ E R+R L+K+ L AYD
Sbjct: 323 CAKTYLLFFPNDEVMNQNLAYYAAMLGEEHTR-SIGPRESAKEYRQRSLLEKELLFFAYD 381
Query: 340 AHGLP 354
G+P
Sbjct: 382 VFGIP 386
>AK027697-1|BAB55305.1| 736|Homo sapiens protein ( Homo sapiens
cDNA FLJ14791 fis, clone NT2RP4001064, weakly similar to
SYNAPTONEMAL COMPLEX PROTEIN SC65. ).
Length = 736
Score = 32.7 bits (71), Expect = 1.5
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +1
Query: 175 CESTEVSFFRND-----NKGYPGSVIMSAHDC*PVHPQNGNDEPRRRDQLDKKFLRRAYD 339
C T + FF ND N Y +++ H + P+ E R+R L+K+ L AYD
Sbjct: 323 CAKTYLLFFPNDEVMNQNLAYYAAMLGEEHTR-SIGPRESAKEYRQRSLLEKELLFFAYD 381
Query: 340 AHGLP 354
G+P
Sbjct: 382 VFGIP 386
>AK027680-1|BAB55291.1| 736|Homo sapiens protein ( Homo sapiens
cDNA FLJ14774 fis, clone NT2RP4000051, weakly similar to
SYNAPTONEMAL COMPLEX PROTEIN SC65. ).
Length = 736
Score = 32.7 bits (71), Expect = 1.5
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +1
Query: 175 CESTEVSFFRND-----NKGYPGSVIMSAHDC*PVHPQNGNDEPRRRDQLDKKFLRRAYD 339
C T + FF ND N Y +++ H + P+ E R+R L+K+ L AYD
Sbjct: 323 CAKTYLLFFPNDEVMNQNLAYYAAMLGEEHTR-SIGPRESAKEYRQRSLLEKELLFFAYD 381
Query: 340 AHGLP 354
G+P
Sbjct: 382 VFGIP 386
>AK027648-1|BAB55264.1| 804|Homo sapiens protein ( Homo sapiens
cDNA FLJ14742 fis, clone NT2RP3002650, highly similar to
Mus musculus growth suppressor 1L (Gros1) mRNA. ).
Length = 804
Score = 32.7 bits (71), Expect = 1.5
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +1
Query: 175 CESTEVSFFRND-----NKGYPGSVIMSAHDC*PVHPQNGNDEPRRRDQLDKKFLRRAYD 339
C T + FF ND N Y +++ H + P+ E R+R L+K+ L AYD
Sbjct: 323 CAKTYLLFFPNDEVMNQNLAYYAAMLGEEHTR-SIGPRESAKEYRQRSLLEKELLFFAYD 381
Query: 340 AHGLP 354
G+P
Sbjct: 382 VFGIP 386
>AF097432-1|AAG31019.1| 736|Homo sapiens GROS1-L protein protein.
Length = 736
Score = 32.7 bits (71), Expect = 1.5
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +1
Query: 175 CESTEVSFFRND-----NKGYPGSVIMSAHDC*PVHPQNGNDEPRRRDQLDKKFLRRAYD 339
C T + FF ND N Y +++ H + P+ E R+R L+K+ L AYD
Sbjct: 323 CAKTYLLFFPNDEVMNQNLAYYAAMLGEEHTR-SIGPRESAKEYRQRSLLEKELLFFAYD 381
Query: 340 AHGLP 354
G+P
Sbjct: 382 VFGIP 386
>BC130511-1|AAI30512.1| 98|Homo sapiens late cornified
envelope-like proline-rich 1 protein.
Length = 98
Score = 30.7 bits (66), Expect = 6.0
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 727 SSYPTRCEESPTCYPCLPHCPQSMVYCC 644
S P+ C P PC P CP S + C
Sbjct: 63 SQSPSSCPPQPCTKPCPPKCPSSCPHAC 90
>BC130507-1|AAI30508.1| 98|Homo sapiens late cornified
envelope-like proline-rich 1 protein.
Length = 98
Score = 30.7 bits (66), Expect = 6.0
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 727 SSYPTRCEESPTCYPCLPHCPQSMVYCC 644
S P+ C P PC P CP S + C
Sbjct: 63 SQSPSSCPPQPCTKPCPPKCPSSCPHAC 90
>BC127252-1|AAI27253.1| 136|Homo sapiens keratin associated protein
4-2 protein.
Length = 136
Score = 30.7 bits (66), Expect = 6.0
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -2
Query: 745 PXVLVTSSYPTRCEESPTCYP--CLPHCPQSMVYCCDTRPKTPLRRSSCCDS 596
P V+S + +C +S C P C P C Q+ CC +T R SCC S
Sbjct: 78 PSCCVSSCFRPQCCQSVCCQPTCCRPSCGQTT--CC----RTTCYRPSCCVS 123
>BC087854-1|AAH87854.1| 98|Homo sapiens late cornified
envelope-like proline-rich 1 protein.
Length = 98
Score = 30.7 bits (66), Expect = 6.0
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 727 SSYPTRCEESPTCYPCLPHCPQSMVYCC 644
S P+ C P PC P CP S + C
Sbjct: 63 SQSPSSCPPQPCTKPCPPKCPSSCPHAC 90
>AL161636-2|CAI19557.1| 98|Homo sapiens novel small proline rich
protein protein.
Length = 98
Score = 30.7 bits (66), Expect = 6.0
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 727 SSYPTRCEESPTCYPCLPHCPQSMVYCC 644
S P+ C P PC P CP S + C
Sbjct: 63 SQSPSSCPPQPCTKPCPPKCPSSCPHAC 90
>AJ406934-1|CAC27573.1| 136|Homo sapiens keratin associated protein
4.2 protein.
Length = 136
Score = 30.7 bits (66), Expect = 6.0
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -2
Query: 745 PXVLVTSSYPTRCEESPTCYP--CLPHCPQSMVYCCDTRPKTPLRRSSCCDS 596
P V+S + +C +S C P C P C Q+ CC +T R SCC S
Sbjct: 78 PSCCVSSCFRPQCCQSVCCQPTCCRPSCGQTT--CC----RTTCYRPSCCVS 123
>CR457273-1|CAG33554.1| 410|Homo sapiens PHF10 protein.
Length = 410
Score = 30.3 bits (65), Expect = 7.9
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -2
Query: 739 VLVTSSYPTRCEESPTCYPC-LPHCPQSMVYC--CD 641
V + +YP +C E TC C PH + M++C CD
Sbjct: 332 VSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCD 367
>BC110323-1|AAI10324.1| 410|Homo sapiens PHD finger protein 10
protein.
Length = 410
Score = 30.3 bits (65), Expect = 7.9
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -2
Query: 739 VLVTSSYPTRCEESPTCYPC-LPHCPQSMVYC--CD 641
V + +YP +C E TC C PH + M++C CD
Sbjct: 332 VSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCD 367
>BC020954-1|AAH20954.1| 408|Homo sapiens PHD finger protein 10
protein.
Length = 408
Score = 30.3 bits (65), Expect = 7.9
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -2
Query: 739 VLVTSSYPTRCEESPTCYPC-LPHCPQSMVYC--CD 641
V + +YP +C E TC C PH + M++C CD
Sbjct: 330 VSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCD 365
>AL513547-3|CAI12316.1| 410|Homo sapiens PHD finger protein 10
protein.
Length = 410
Score = 30.3 bits (65), Expect = 7.9
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -2
Query: 739 VLVTSSYPTRCEESPTCYPC-LPHCPQSMVYC--CD 641
V + +YP +C E TC C PH + M++C CD
Sbjct: 332 VSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCD 367
>AK001837-1|BAA91934.1| 410|Homo sapiens protein ( Homo sapiens
cDNA FLJ10975 fis, clone PLACE1001383, weakly similar to
ZINC-FINGER PROTEIN UBI-D4 . ).
Length = 410
Score = 30.3 bits (65), Expect = 7.9
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -2
Query: 739 VLVTSSYPTRCEESPTCYPC-LPHCPQSMVYC--CD 641
V + +YP +C E TC C PH + M++C CD
Sbjct: 332 VSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCD 367
>AF338735-1|AAK27451.1| 410|Homo sapiens hypothetical PHD zinc
finger protein XAP135 protein.
Length = 410
Score = 30.3 bits (65), Expect = 7.9
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -2
Query: 739 VLVTSSYPTRCEESPTCYPC-LPHCPQSMVYC--CD 641
V + +YP +C E TC C PH + M++C CD
Sbjct: 332 VSMIKTYPWQCMECKTCIICGQPHHEEEMMFCDMCD 367
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,354,875
Number of Sequences: 237096
Number of extensions: 2104640
Number of successful extensions: 5029
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5029
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9255747988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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