Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16d22
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    24   1.3  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   5.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.0  

>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 350 ECDICFGRTFTNCAN*CPPSSSG 282
           ECD+   RT TNC++     S G
Sbjct: 6   ECDLATPRTGTNCSSGSSSDSDG 28


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 306 LMSTIKLWLRKKVVMCCAIIHYSLKG 229
           ++STI LW   K++     IH  L G
Sbjct: 399 IVSTILLWFINKIIPIRMSIHDELLG 424


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -3

Query: 679 NIKEPIFPIDTSKHQSHREYNTLGQPVEMLPAKLFHSPA 563
           N+K  I   +    QS  +Y    +P E    K+ H P+
Sbjct: 69  NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVKMLHVPS 107


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -3

Query: 679 NIKEPIFPIDTSKHQSHREYNTLGQPVEMLPAKLFHSPA 563
           N+K  I   +    QS  +Y    +P E    K+ H P+
Sbjct: 69  NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVKMLHVPS 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,937
Number of Sequences: 438
Number of extensions: 4964
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)