Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16d21
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0022 + 27733247-27733935,27735722-27735981,27736213-277364...    29   5.8  
01_07_0038 - 40661252-40661460,40661743-40661824,40661882-406619...    28   7.6  

>11_08_0022 +
           27733247-27733935,27735722-27735981,27736213-27736404,
           27737695-27738686
          Length = 710

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 112 IGISLLAGAFNFGPVCKCMKLKFISYVCHKRNKPQYI 2
           IGI ++AG   FG V  C++ K+    C+ RN  Q +
Sbjct: 377 IGILVIAGVVLFGLVLVCLRKKWKLKGCYDRNGGQML 413


>01_07_0038 -
           40661252-40661460,40661743-40661824,40661882-40661904,
           40662461-40662536,40662590-40662658,40664047-40664181
          Length = 197

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 68  NWTKIKSTGQ*TNSNRTFLWCLRC 139
           NW K KS+ Q  +S RT  W LRC
Sbjct: 172 NWEK-KSSSQSNDSARTLAWFLRC 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,229,906
Number of Sequences: 37544
Number of extensions: 370224
Number of successful extensions: 613
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)