Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16d21
         (811 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U21324-3|AAA62565.2|  166|Caenorhabditis elegans Hypothetical pr...    29   5.2  
Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical pr...    28   9.1  

>Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical
           protein T09E8.2 protein.
          Length = 954

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -1

Query: 493 FPIRCGPDHYLCIINIVFVLFTHTIPTQENLSVYHFNVHFYMARKHENIII 341
           FP++ G    L  I+ +   F  + PT+  + VYHFN   +   + + I++
Sbjct: 558 FPVKEGNKFQLKKISWLRRRFLRSKPTRYRICVYHFNRKAFQVNQDDKIVL 608


>U21324-3|AAA62565.2|  166|Caenorhabditis elegans Hypothetical
           protein C35D10.8 protein.
          Length = 166

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
 Frame = -2

Query: 492 FLSGVDPTITYALLISYLYYLHIQYLPKK-------ICLYITLTYISTWLENTRILLY-- 340
           FLS V    T+ALL+ ++  L I  +P +       + LYI  T    W+   R  ++  
Sbjct: 8   FLSSVGVITTFALLLHFIEILAINGVPSRPIAVFISLSLYIWFTVFGQWVTRARRAIFNE 67

Query: 339 RNISI 325
           RN+ +
Sbjct: 68  RNLLV 72


>Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical
           protein T25E12.11 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 136 LHDQINIFFHNYITFIVWLKILLKVYI 216
           LH   ++F HNYI F  +L +L K+ I
Sbjct: 220 LHSPQHMFLHNYIFFQSFLVVLFKLII 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,638,159
Number of Sequences: 27780
Number of extensions: 402330
Number of successful extensions: 907
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)