Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16d21
         (811 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    24   1.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   7.7  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 326 MEIFLYNNILVFSSHVEMYVKVIY 397
           ++ F YNN  V+ + VE Y  +IY
Sbjct: 190 VQSFDYNNTWVYIADVEGYALIIY 213


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 515 HVRK-RTDISYPVWTRPLLMHY*YRICIIYTYNTYPRKS 402
           H R  +T +  P W R + +H   R+ ++  YNT  ++S
Sbjct: 328 HFRSPQTHVMAP-WVRRVFIHVLPRLLVMRRYNTPSKRS 365


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
 Frame = -2

Query: 423 QYLPKKICLYITLTYISTWLEN------TRILLYRNISIK 322
           +YLP  + + ITLTY+  ++        T I+++RN S++
Sbjct: 26  KYLPLTLIVPITLTYVVIFVTGFVGNIITCIVIWRNPSMQ 65


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -2

Query: 501  YRHFLSGVDPTI-TYALL 451
            +RHF+SG+D  +  YA L
Sbjct: 988  HRHFISGIDSNLHVYAPL 1005


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 593 NYVITY*VKLTNFDSGIMLK*RIKKEH 513
           +YVI+  VK T+F    M+K  +K +H
Sbjct: 425 SYVISGIVKCTDFVDKAMVKQYVKVKH 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,679
Number of Sequences: 438
Number of extensions: 4954
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)