Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16d20
         (849 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0669 - 30755406-30756081,30756869-30756933,30757040-307572...    29   6.2  

>02_05_0669 -
           30755406-30756081,30756869-30756933,30757040-30757209,
           30757313-30757496,30758536-30758619,30758740-30758938,
           30760200-30760441,30761811-30762053
          Length = 620

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 706 KQKYTPSLSPKDYKFVINHLKK*KIWGKCRFYXLRCRXXDKY 831
           KQ  + SLSP + K  ++ L      G C    L CR  DK+
Sbjct: 186 KQDKSSSLSPSEIKEHLDRLGDQLFTGTCAMPPLHCRSKDKF 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,153,146
Number of Sequences: 37544
Number of extensions: 297478
Number of successful extensions: 468
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)