Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16d20
         (849 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40060-6|AAA81144.1|  268|Caenorhabditis elegans Hypothetical pr...    31   1.4  
AF022977-3|AAB88609.1|  554|Caenorhabditis elegans Hypothetical ...    29   5.5  
U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine rece...    28   7.3  

>U40060-6|AAA81144.1|  268|Caenorhabditis elegans Hypothetical
           protein F38B6.3 protein.
          Length = 268

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
 Frame = +1

Query: 613 YSHYFFNCLFNTNNKRIIYVQ------QLLRANRNNQKQKYTPSLSPKD 741
           +S +FFN  F+ + + +I+++      Q +  N +NQ Q Y PS + ++
Sbjct: 8   FSRFFFNFTFSRSRENMIHIENGKESIQKMSYNHHNQSQGYVPSYNSQN 56


>AF022977-3|AAB88609.1|  554|Caenorhabditis elegans Hypothetical
           protein ZK994.1 protein.
          Length = 554

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 161 FDNKFQQNYKNGSRSVITKSGLTNKNGGFFID--VTNF 268
           + NK+    KN S  V+  SGL   +G FF D  + NF
Sbjct: 109 YSNKYCIENKNCSVMVVVPSGLVQSHGSFFNDTIINNF 146


>U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine
           receptor, class x protein77 protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 236 FYWSNPILL*RFYCHFYSFVEIYY 165
           FYWS  +L+  F+ + ++F  +YY
Sbjct: 182 FYWSLGLLIFPFFVNIFTFARLYY 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,220,897
Number of Sequences: 27780
Number of extensions: 346832
Number of successful extensions: 787
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)