Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16d20
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              24   1.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   2.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   2.0  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   8.2  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 56  LSSTKTTIEDIV*SDCRRFSKSITITNIFYILLGRFDNKFQQNYK 190
           +  TKTTIED+  ++   F +   +   F  +L +F+   ++N K
Sbjct: 44  IGETKTTIEDVEATEYGEFPEDEKLKCYFNCVLEKFNVMDKKNGK 88


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 87  ISSIVVLVELSIIGYVVFVFICYGWL 10
           I  IVV+  +SII Y+ F+ + Y  L
Sbjct: 402 ICLIVVIALVSIIMYIAFIILQYAGL 427


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 361 SLRCYLLLDTTNNNTAEFTSYQF 429
           SL   +LLDTT     E+T Y F
Sbjct: 11  SLVSVVLLDTTQEEKLEWTKYPF 33


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +1

Query: 694 RNNQKQKYTPSLSPKDYKFVINHLKK*KIWGKCR 795
           + N+   +       D K+V+N++K+ + W + R
Sbjct: 17  KRNENDPFLKRPITGDEKWVVNNIKRKRWWSRPR 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,913
Number of Sequences: 438
Number of extensions: 4607
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)