Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16d19
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0501 - 4184932-4185048,4185360-4185456,4185537-4185709,418...    34   0.13 
02_04_0193 - 20801959-20802583,20803372-20803448,20803530-208036...    29   3.7  
10_01_0088 + 1087807-1088282,1088752-1088974                           28   6.5  
07_01_1021 + 8736032-8736106,8736336-8736374,8737362-8737493,873...    28   6.5  
05_03_0326 - 12444830-12445074,12445218-12445425                       28   6.5  

>05_01_0501 -
           4184932-4185048,4185360-4185456,4185537-4185709,
           4186225-4186305,4186959-4187072,4187177-4187497
          Length = 300

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -2

Query: 718 QYSSHVSLQAPSGHMXGTFRMERED---GYTFDCRIPPFSLESKPDE 587
           +YSS   L  P+G M G F M+  D     TF+  I PFSL    D+
Sbjct: 248 EYSSACPLNTPNGRMEGDFEMKHIDKAGSSTFNVAIAPFSLSILGDD 294


>02_04_0193 -
           20801959-20802583,20803372-20803448,20803530-20803646,
           20804147-20804250,20804359-20804428,20804547-20804644,
           20804747-20804840,20805269-20805359,20805453-20805545,
           20805635-20805960,20806162-20806641
          Length = 724

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 526 LSRVRSGAGGAVTREGRGVRSRRACSQGRRAGCGSRT 636
           ++R   G GG +TRE R +       + RRA C SR+
Sbjct: 603 VARPSGGTGGGLTREDRAMLQDVYAGRRRRAPCHSRS 639


>10_01_0088 + 1087807-1088282,1088752-1088974
          Length = 232

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +1

Query: 541 SGAGGAVTREGRGVRSRRACSQGRR-AGC--GSRTCSR 645
           S   G+  R GRG   RR CS G R  GC  G R C R
Sbjct: 87  SAIAGSGARYGRGGGWRRGCSGGGRWRGCWRGRRGCRR 124


>07_01_1021 +
           8736032-8736106,8736336-8736374,8737362-8737493,
           8737848-8737892,8738450-8739157,8740679-8740807,
           8741290-8741346,8742937-8742954
          Length = 400

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +1

Query: 538 RSGAGGAVTREGRGVRSRRACSQGRRAG 621
           RSG GG    E RG   RR   +GRR G
Sbjct: 239 RSGDGGDAGGEERGAGPRRLLVEGRRGG 266


>05_03_0326 - 12444830-12445074,12445218-12445425
          Length = 150

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = +1

Query: 523 WLSRVRSGAGGAVTREGRGVRSRRACSQGRRAGCGSRTCSRLRA 654
           WLS   SG+    T   R  R  RA    RRAG G +   RLR+
Sbjct: 40  WLSSACSGSTSTKTMS-RWRRPVRAPEHCRRAGSGDKASERLRS 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,967,741
Number of Sequences: 37544
Number of extensions: 285059
Number of successful extensions: 809
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)