Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16d19
(719 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC009265-1|AAH09265.1| 368|Homo sapiens polymerase (DNA-directe... 75 3e-13
BC000655-1|AAH00655.1| 368|Homo sapiens polymerase (DNA-directe... 75 3e-13
AF179891-1|AAK92018.1| 368|Homo sapiens putative DNA polymerase... 75 3e-13
AY898804-1|AAX51890.1| 388|Homo sapiens XL protein. 32 1.8
AL132655-7|CAM28315.1| 720|Homo sapiens GNAS complex locus prot... 32 1.8
AL132655-6|CAI43073.2| 1037|Homo sapiens GNAS complex locus prot... 32 1.8
AL132655-5|CAI43074.2| 1023|Homo sapiens GNAS complex locus prot... 32 1.8
AL121917-8|CAI42566.2| 1037|Homo sapiens GNAS complex locus prot... 32 1.8
AL121917-7|CAI42567.2| 1023|Homo sapiens GNAS complex locus prot... 32 1.8
AL109840-9|CAI42932.2| 1037|Homo sapiens GNAS complex locus prot... 32 1.8
AL109840-8|CAI42933.2| 1023|Homo sapiens GNAS complex locus prot... 32 1.8
AJ251760-2|CAB83215.1| 388|Homo sapiens XLalphas protein protein. 32 1.8
AJ224868-1|CAA12165.1| 441|Homo sapiens GNAS1 protein. 32 1.8
AK126932-1|BAC86752.1| 121|Homo sapiens ). protein. 32 2.4
>BC009265-1|AAH09265.1| 368|Homo sapiens polymerase (DNA-directed),
delta interacting protein 2 protein.
Length = 368
Score = 74.9 bits (176), Expect = 3e-13
Identities = 35/44 (79%), Positives = 35/44 (79%)
Frame = -2
Query: 718 QYSSHVSLQAPSGHMXGTFRMEREDGYTFDCRIPPFSLESKPDE 587
QYSSHVSLQA SGHM GTFR ER DG FD RIPPFSLES DE
Sbjct: 316 QYSSHVSLQASSGHMWGTFRFERPDGSHFDVRIPPFSLESNKDE 359
>BC000655-1|AAH00655.1| 368|Homo sapiens polymerase (DNA-directed),
delta interacting protein 2 protein.
Length = 368
Score = 74.9 bits (176), Expect = 3e-13
Identities = 35/44 (79%), Positives = 35/44 (79%)
Frame = -2
Query: 718 QYSSHVSLQAPSGHMXGTFRMEREDGYTFDCRIPPFSLESKPDE 587
QYSSHVSLQA SGHM GTFR ER DG FD RIPPFSLES DE
Sbjct: 316 QYSSHVSLQASSGHMWGTFRFERPDGSHFDVRIPPFSLESNKDE 359
>AF179891-1|AAK92018.1| 368|Homo sapiens putative DNA polymerase
delta p38 subunit protein.
Length = 368
Score = 74.9 bits (176), Expect = 3e-13
Identities = 35/44 (79%), Positives = 35/44 (79%)
Frame = -2
Query: 718 QYSSHVSLQAPSGHMXGTFRMEREDGYTFDCRIPPFSLESKPDE 587
QYSSHVSLQA SGHM GTFR ER DG FD RIPPFSLES DE
Sbjct: 316 QYSSHVSLQASSGHMWGTFRFERPDGSHFDVRIPPFSLESNKDE 359
>AY898804-1|AAX51890.1| 388|Homo sapiens XL protein.
Length = 388
Score = 32.3 bits (70), Expect = 1.8
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -1
Query: 656 GARRRLHVRLPHPALLP*EQARRDRTPRPSRVTA 555
GARR++H+R P P + QA TPRP+R +A
Sbjct: 220 GARRKIHLRPPSPEI----QAADPPTPRPTRASA 249
>AL132655-7|CAM28315.1| 720|Homo sapiens GNAS complex locus
protein.
Length = 720
Score = 32.3 bits (70), Expect = 1.8
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -1
Query: 656 GARRRLHVRLPHPALLP*EQARRDRTPRPSRVTA 555
GARR++H+R P P + QA TPRP+R +A
Sbjct: 521 GARRKIHLRPPSPEI----QAADPPTPRPTRASA 550
>AL132655-6|CAI43073.2| 1037|Homo sapiens GNAS complex locus
protein.
Length = 1037
Score = 32.3 bits (70), Expect = 1.8
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -1
Query: 656 GARRRLHVRLPHPALLP*EQARRDRTPRPSRVTA 555
GARR++H+R P P + QA TPRP+R +A
Sbjct: 521 GARRKIHLRPPSPEI----QAADPPTPRPTRASA 550
>AL132655-5|CAI43074.2| 1023|Homo sapiens GNAS complex locus
protein.
Length = 1023
Score = 32.3 bits (70), Expect = 1.8
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -1
Query: 656 GARRRLHVRLPHPALLP*EQARRDRTPRPSRVTA 555
GARR++H+R P P + QA TPRP+R +A
Sbjct: 521 GARRKIHLRPPSPEI----QAADPPTPRPTRASA 550
>AL121917-8|CAI42566.2| 1037|Homo sapiens GNAS complex locus
protein.
Length = 1037
Score = 32.3 bits (70), Expect = 1.8
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -1
Query: 656 GARRRLHVRLPHPALLP*EQARRDRTPRPSRVTA 555
GARR++H+R P P + QA TPRP+R +A
Sbjct: 521 GARRKIHLRPPSPEI----QAADPPTPRPTRASA 550
>AL121917-7|CAI42567.2| 1023|Homo sapiens GNAS complex locus
protein.
Length = 1023
Score = 32.3 bits (70), Expect = 1.8
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -1
Query: 656 GARRRLHVRLPHPALLP*EQARRDRTPRPSRVTA 555
GARR++H+R P P + QA TPRP+R +A
Sbjct: 521 GARRKIHLRPPSPEI----QAADPPTPRPTRASA 550
>AL109840-9|CAI42932.2| 1037|Homo sapiens GNAS complex locus
protein.
Length = 1037
Score = 32.3 bits (70), Expect = 1.8
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -1
Query: 656 GARRRLHVRLPHPALLP*EQARRDRTPRPSRVTA 555
GARR++H+R P P + QA TPRP+R +A
Sbjct: 521 GARRKIHLRPPSPEI----QAADPPTPRPTRASA 550
>AL109840-8|CAI42933.2| 1023|Homo sapiens GNAS complex locus
protein.
Length = 1023
Score = 32.3 bits (70), Expect = 1.8
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -1
Query: 656 GARRRLHVRLPHPALLP*EQARRDRTPRPSRVTA 555
GARR++H+R P P + QA TPRP+R +A
Sbjct: 521 GARRKIHLRPPSPEI----QAADPPTPRPTRASA 550
>AJ251760-2|CAB83215.1| 388|Homo sapiens XLalphas protein protein.
Length = 388
Score = 32.3 bits (70), Expect = 1.8
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -1
Query: 656 GARRRLHVRLPHPALLP*EQARRDRTPRPSRVTA 555
GARR++H+R P P + QA TPRP+R +A
Sbjct: 220 GARRKIHLRPPSPEI----QAADPPTPRPTRASA 249
>AJ224868-1|CAA12165.1| 441|Homo sapiens GNAS1 protein.
Length = 441
Score = 32.3 bits (70), Expect = 1.8
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -1
Query: 656 GARRRLHVRLPHPALLP*EQARRDRTPRPSRVTA 555
GARR++H+R P P + QA TPRP+R +A
Sbjct: 220 GARRKIHLRPPSPEI----QAADPPTPRPTRASA 249
>AK126932-1|BAC86752.1| 121|Homo sapiens ). protein.
Length = 121
Score = 31.9 bits (69), Expect = 2.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 606 REKGGMRQSNV*PSSRSILNVPXIWPLGACRLTWLLY 716
R+ G ++ S L+ P W +GACR TWL++
Sbjct: 37 RDLGSLQSPTPGLKPSSHLSFPSSWDIGACRHTWLIF 73
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,318,609
Number of Sequences: 237096
Number of extensions: 1581723
Number of successful extensions: 3224
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3224
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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