Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16d19
         (719 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069102-1|AAL39247.1|  410|Drosophila melanogaster GH11824p pro...    93   3e-19
AE014297-253|AAF52026.1|  410|Drosophila melanogaster CG12162-PA...    93   3e-19
AE014297-252|AAN13239.1|  431|Drosophila melanogaster CG12162-PB...    93   3e-19

>AY069102-1|AAL39247.1|  410|Drosophila melanogaster GH11824p
           protein.
          Length = 410

 Score = 93.1 bits (221), Expect = 3e-19
 Identities = 39/44 (88%), Positives = 43/44 (97%)
 Frame = -2

Query: 718 QYSSHVSLQAPSGHMXGTFRMEREDGYTFDCRIPPFSLESKPDE 587
           QYSSHVSLQAPSGHM GTFR+EREDGY+FDC+IPPFSLESKPD+
Sbjct: 347 QYSSHVSLQAPSGHMWGTFRLEREDGYSFDCKIPPFSLESKPDD 390


>AE014297-253|AAF52026.1|  410|Drosophila melanogaster CG12162-PA,
           isoform A protein.
          Length = 410

 Score = 93.1 bits (221), Expect = 3e-19
 Identities = 39/44 (88%), Positives = 43/44 (97%)
 Frame = -2

Query: 718 QYSSHVSLQAPSGHMXGTFRMEREDGYTFDCRIPPFSLESKPDE 587
           QYSSHVSLQAPSGHM GTFR+EREDGY+FDC+IPPFSLESKPD+
Sbjct: 347 QYSSHVSLQAPSGHMWGTFRLEREDGYSFDCKIPPFSLESKPDD 390


>AE014297-252|AAN13239.1|  431|Drosophila melanogaster CG12162-PB,
           isoform B protein.
          Length = 431

 Score = 93.1 bits (221), Expect = 3e-19
 Identities = 39/44 (88%), Positives = 43/44 (97%)
 Frame = -2

Query: 718 QYSSHVSLQAPSGHMXGTFRMEREDGYTFDCRIPPFSLESKPDE 587
           QYSSHVSLQAPSGHM GTFR+EREDGY+FDC+IPPFSLESKPD+
Sbjct: 368 QYSSHVSLQAPSGHMWGTFRLEREDGYSFDCKIPPFSLESKPDD 411


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,924,401
Number of Sequences: 53049
Number of extensions: 485736
Number of successful extensions: 937
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3211306956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)