Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16d18
(801 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ... 102 7e-23
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 38 0.002
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 35 0.012
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 26 5.4
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 26 5.4
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 7.2
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 25 9.5
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|... 25 9.5
>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 102 bits (244), Expect = 7e-23
Identities = 59/213 (27%), Positives = 109/213 (51%), Gaps = 18/213 (8%)
Frame = -2
Query: 716 IPPQKTFPLCTIANTPRLPEHCIEYVKVIQW------------AKENPW----GSSTTLD 585
+ P+ ++P+CT+ANTPRLPEHC+E+ +++W +K+ + G ++ +
Sbjct: 196 LTPKISYPICTLANTPRLPEHCVEWAYLLEWPRVFLNASVDSFSKQEVFEPLDGKNSNFE 255
Query: 584 GDDPQHVVWVYEKAQERAMKHGI--ANVTYRLTQGVLKNIIPXXXXXXXXXXXXXATEVF 411
D+ +H+ W+ +++ ERA K I +++ QG++K IIP E
Sbjct: 256 PDNIRHIDWLVKRSIERANKFQIPSSSINRFFVQGIVKRIIPAVASTNAIIAASCCNEAL 315
Query: 410 KLASSCCVNMNNYMVLNMADGVYTYTFSAEKRPDCVACCNSTRVMKIDPDATLQYIYTKL 231
K+ + ++NYM+ DG YTYTF+ EKR DC C + V I +T+
Sbjct: 316 KILTESNPFLDNYMMYVGEDGAYTYTFNLEKRSDCPVCGVLSEVYDISASSTVTLKDILN 375
Query: 230 CEDQAYLMKSPGITTVINGCNKTLYMSSIKSIE 132
++Y +++P ++T LY++S +++
Sbjct: 376 HYSKSYNLQNPSVST---AAGTPLYLASPPALQ 405
Score = 31.5 bits (68), Expect = 0.14
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 783 LKAMLEFILPGMSACIECTLDLYPPTKNFP 694
LK I+P +++C EC+LD+ P ++P
Sbjct: 174 LKGQARVIIPTITSCYECSLDMLTPKISYP 203
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 799 GGTEGFKGNARVYITWHECMY*VYFRSISPHKKLSLC 689
GG+EG KG ARV I Y ++P +C
Sbjct: 169 GGSEGLKGQARVIIPTITSCYECSLDMLTPKISYPIC 205
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 37.5 bits (83), Expect = 0.002
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -2
Query: 710 PQKTFPLCTIANTPRLPEHCIEYVK 636
P KT+P+CTI +TP P HC+ + K
Sbjct: 174 PPKTYPVCTIRSTPSQPIHCVVWAK 198
>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1012
Score = 35.1 bits (77), Expect = 0.012
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2
Query: 713 PPQKTFPLCTIANTPRLPEHCIEYVK 636
PP+K+FP+CT+ N P EH I + +
Sbjct: 585 PPEKSFPICTLKNFPNRIEHTIAWAR 610
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = +1
Query: 526 FIALSWAFSYTHTTCCGSSPSKVVELPHGFSFAH*ITLT 642
F LSW S + SP LP GFSF H +TLT
Sbjct: 75 FQFLSWLISEDVHSNLEISPYYTKALPQGFSF-HPVTLT 112
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 162 CFIASINYSGYAWTLHQISLIFAKFCINIL*CSIRI-DFHNPSRI 293
CF + Y + W + LIF + + SIRI F++P+++
Sbjct: 544 CFGSYFMYINHGWCSYLGGLIFTSYVLIYSFASIRISSFYSPAKV 588
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 165 FIASINYSGYAWTLHQISLIFAKFCINIL 251
F + Y +A + Q+S++F KF INI+
Sbjct: 239 FFDFVQYLQFAVSTAQVSVMFPKFYINIM 267
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 319 FSALNVYVYTPSAIFSTM*LFIF 387
F +LNVY YTP S M L F
Sbjct: 743 FISLNVYAYTPEEFASQMTLLEF 765
>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 515 QSHASLPFLGPFHTPTRHAVDHHHLK 592
+ + ++PFL P +T VDH LK
Sbjct: 160 RENPAVPFLPPLYTHNHDPVDHKSLK 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,231,448
Number of Sequences: 5004
Number of extensions: 66570
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -