Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16d18
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1178 + 9385261-9385374,9385457-9385620,9386251-9386453,938... 72 5e-13
07_03_1076 + 23779941-23779988,23780102-23780191,23781580-237816... 35 0.066
12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-31... 31 1.4
11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-29... 31 1.4
07_03_1774 + 29425486-29425831,29426018-29426235,29426337-294271... 31 1.4
03_02_0665 - 10268959-10269148,10269344-10269936,10270572-102710... 31 1.4
07_03_1779 - 29458889-29459249,29461107-29461283,29461374-294615... 29 3.3
07_01_0641 - 4790704-4790720,4790824-4791296,4791707-4792023,479... 28 7.5
04_04_1462 - 33769122-33769151,33769385-33769426,33769571-337701... 28 7.5
>01_01_1178 +
9385261-9385374,9385457-9385620,9386251-9386453,
9387130-9387362,9387584-9387640,9388120-9388241,
9388366-9388425,9388426-9388543,9389005-9389286
Length = 450
Score = 72.1 bits (169), Expect = 5e-13
Identities = 45/117 (38%), Positives = 55/117 (47%)
Frame = -2
Query: 713 PPQKTFPLCTIANTPRLPEHCIEYVKVIQWAKENPWGSSTTLDGDDPQHVVWVYEKAQER 534
PPQ FPLCT+A TPR HCIEY +I+W +A +R
Sbjct: 207 PPQVKFPLCTLAETPRTAAHCIEYAHLIKW------------------------NEALKR 242
Query: 533 AMKHGIANVTYRLTQGVLKNIIPXXXXXXXXXXXXXATEVFKLASSCCVNMNNYMVL 363
A GI+ VTY TQGV+KNIIP A E KL S C ++NY+ L
Sbjct: 243 AELFGISGVTYSFTQGVVKNIIPAIASTNAIVSAACALEALKLISGCSKTVSNYLTL 299
Score = 32.7 bits (71), Expect = 0.35
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 780 KAMLEFILPGMSACIECTLDLYPPTKNFP 694
K I+PG + C EC + L+PP FP
Sbjct: 185 KGHARVIIPGTTPCFECNIWLFPPQVKFP 213
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -3
Query: 799 GGTEGFKGNARVYITWHECMY*VYFRSISPHKKLSLC 689
GGTEGFKG+ARV I + P K LC
Sbjct: 179 GGTEGFKGHARVIIPGTTPCFECNIWLFPPQVKFPLC 215
>07_03_1076 +
23779941-23779988,23780102-23780191,23781580-23781663,
23781792-23782010,23782873-23782974,23783809-23784207,
23784332-23784561,23784749-23784842,23784931-23785113,
23785254-23785351,23785831-23786143
Length = 619
Score = 35.1 bits (77), Expect = 0.066
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -2
Query: 713 PPQKTFPLCTIANTPRLPEHCIEYVKVIQWAK 618
P K++P+CTI +TP HCI + K + +AK
Sbjct: 165 PVPKSYPVCTITSTPSKFVHCIVWAKELLFAK 196
>12_01_0038 -
312152-312748,312930-313362,313572-314440,314535-314584,
314589-315192,315674-315718,316100-316317,317020-317332,
318681-318716
Length = 1054
Score = 30.7 bits (66), Expect = 1.4
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -2
Query: 713 PPQKTFPLCTIANTPRLPEHCIEYVK 636
PP+K P+CT+ + P +HC+ + +
Sbjct: 622 PPEKQAPMCTVHSFPHNIDHCLTWAR 647
>11_01_0039 -
290960-291086,291615-291714,291809-292013,292466-292513,
295071-295646,295828-296260,296470-297338,297433-298227,
298709-298753,299135-299352,300055-300364,302715-302984
Length = 1331
Score = 30.7 bits (66), Expect = 1.4
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -2
Query: 713 PPQKTFPLCTIANTPRLPEHCIEYVK 636
PP+K P+CT+ + P +HC+ + +
Sbjct: 746 PPEKQAPMCTVHSFPHNIDHCLTWAR 771
>07_03_1774 +
29425486-29425831,29426018-29426235,29426337-29427131,
29427206-29428074,29428317-29428749,29429263-29429859
Length = 1085
Score = 30.7 bits (66), Expect = 1.4
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -2
Query: 713 PPQKTFPLCTIANTPRLPEHCIEYVK 636
PP+K P+CT+ + P +HC+ + +
Sbjct: 653 PPEKQAPMCTVHSFPHNIDHCLTWAR 678
>03_02_0665 -
10268959-10269148,10269344-10269936,10270572-10271004,
10271172-10272040,10272121-10272915,10273612-10273829,
10274931-10275230,10276834-10277161
Length = 1241
Score = 30.7 bits (66), Expect = 1.4
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -2
Query: 713 PPQKTFPLCTIANTPRLPEHCIEYVK 636
PP+K P+CT+ + P +HC+ + +
Sbjct: 747 PPEKQAPMCTVHSFPHNIDHCLTWAR 772
>07_03_1779 -
29458889-29459249,29461107-29461283,29461374-29461573,
29461673-29462752
Length = 605
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 521 HASLPFLGPFHTPTRHAVDHHHLKLLNYPMDSPLPIEL 634
HA P P T T + HL+L+N PM S L +EL
Sbjct: 181 HAPAP---PPRTNTNTSSSDQHLRLINIPMSSDLDLEL 215
>07_01_0641 -
4790704-4790720,4790824-4791296,4791707-4792023,
4792094-4792423
Length = 378
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 513 SNPMLHCPFLGLFIHPHDMLWIITI*SC*TTPWIL 617
SN ++C L F+ P ++W + C T W+L
Sbjct: 244 SNNGIYCASLPSFLRPQILVWFLNERYCGQTEWVL 278
>04_04_1462 -
33769122-33769151,33769385-33769426,33769571-33770158,
33770398-33770508,33770585-33770625,33771238-33771382,
33771578-33771781,33772626-33772769,33772991-33773183,
33774559-33774602,33774694-33774822,33774907-33774954,
33775058-33775120,33775198-33775236,33776694-33776767,
33777460-33777518,33777709-33777768,33777920-33778044,
33778693-33778751,33779418-33779511,33779572-33779625,
33779775-33779813,33780423-33780602
Length = 854
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 568 CCGSSPSKVVELPHGFSFAH*ITL-TYSIQCSGNLGVLAMVHKG 696
CCG S+ PHG S +TL +Y C +G+ ++H+G
Sbjct: 399 CCGDRRSRAAGDPHGRSSCCYLTLNSYLEACRFCVGMEVVLHEG 442
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,910,451
Number of Sequences: 37544
Number of extensions: 389897
Number of successful extensions: 853
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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