Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16d18
(801 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membran... 151 6e-37
Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical pr... 31 0.73
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p... 31 0.73
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p... 31 0.73
Z38016-1|CAA86114.1| 856|Caenorhabditis elegans serine/threonin... 30 1.7
AL117207-1|CAB60406.1| 856|Caenorhabditis elegans Hypothetical ... 30 1.7
Z81116-14|CAB03310.2| 335|Caenorhabditis elegans Hypothetical p... 29 5.1
Z81100-6|CAB03195.2| 335|Caenorhabditis elegans Hypothetical pr... 29 5.1
>U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membrane
ruffles in embryoprotein 1 protein.
Length = 430
Score = 151 bits (366), Expect = 6e-37
Identities = 84/232 (36%), Positives = 119/232 (51%)
Frame = -2
Query: 713 PPQKTFPLCTIANTPRLPEHCIEYVKVIQWAKENPWGSSTTLDGDDPQHVVWVYEKAQER 534
PPQ FPLCTIA+TPRLPEHCIEY+KV+ W +E P+ +LD DDP HV WV E+A R
Sbjct: 203 PPQVNFPLCTIAHTPRLPEHCIEYIKVVVWPEEKPF-EGVSLDADDPIHVEWVLERASLR 261
Query: 533 AMKHGIANVTYRLTQGVLKNIIPXXXXXXXXXXXXXATEVFKLASSCCVNMNNYMVLNMA 354
A K+ I V RLT GVLK IIP A E KLA++ ++NY+
Sbjct: 262 AEKYNIRGVDRRLTSGVLKRIIPAVASTNAVIAASCALEALKLATNIAKPIDNYLNFTQI 321
Query: 353 DGVYTYTFSAEKRPDCVACCNSTRVMKIDPDATLQYIYTKLCEDQAYLMKSPGITTVING 174
G YT S K +C+ C ++ P +TL+ + +L E + +K P T+
Sbjct: 322 HGAYTSVVSMMKDDNCLTCSGGRLPFEVSPSSTLESLIIRLSE--RFHLKHP---TLATS 376
Query: 173 CNKTLYMSSIKSIEERXXXXXXXXXXXXXLFNGADILVADVTTPNTITIKLK 18
K +SS E+ + +G +ILV+D +T++++
Sbjct: 377 TRKLYCISSFMPQFEQESKENLHTSMKDLVSDGEEILVSDEALSRALTLRIQ 428
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = -1
Query: 780 KAMLEFILPGMSACIECTLDLYPPTKNFP 694
K I P +ACI+CTLDLYPP NFP
Sbjct: 181 KGNARVIYPKFTACIDCTLDLYPPQVNFP 209
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -3
Query: 799 GGTEGFKGNARV 764
GGTEGFKGNARV
Sbjct: 175 GGTEGFKGNARV 186
>Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical
protein W02A11.4 protein.
Length = 582
Score = 31.5 bits (68), Expect = 0.73
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = -2
Query: 707 QKTFPLCTIANTPRLPEHCIEYVKVI--QWAKENPWGS--STTLDGDDPQHVVWVYEKAQ 540
Q T+P CTI NTP HC + K + Q E S +D DP + V + +
Sbjct: 164 QTTYPGCTIRNTPSEHIHCTVWAKHVFNQLFGEVDIDDDVSPDMDAVDPDNTEAVTTEKE 223
Query: 539 ERAMKHGIANVTYR 498
+ AMK A V R
Sbjct: 224 KEAMKEEPAPVGTR 237
>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
protein C47E12.5b protein.
Length = 1028
Score = 31.5 bits (68), Expect = 0.73
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 713 PPQKTFPLCTIANTPRLPEHCIEYVKVIQWAKE 615
PP+K P+CT+ N P +H IQWA+E
Sbjct: 588 PPEKEIPVCTLKNFPNEIQH------TIQWARE 614
>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
protein C47E12.5a protein.
Length = 1113
Score = 31.5 bits (68), Expect = 0.73
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 713 PPQKTFPLCTIANTPRLPEHCIEYVKVIQWAKE 615
PP+K P+CT+ N P +H IQWA+E
Sbjct: 673 PPEKEIPVCTLKNFPNEIQH------TIQWARE 699
>Z38016-1|CAA86114.1| 856|Caenorhabditis elegans serine/threonine
kinase protein.
Length = 856
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 52 TSATNISAPLNKPKSVNFFFKLSFVLSSMLLI--DDMYNVLLHPLITV 189
TS TN S+P + + + + + +LSS LL+ ++ N +LHP + V
Sbjct: 692 TSTTNTSSPYRRAEQLVVYVRALHMLSSALLLAQTNVANRVLHPSVAV 739
>AL117207-1|CAB60406.1| 856|Caenorhabditis elegans Hypothetical
protein Y60A3A.1 protein.
Length = 856
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 52 TSATNISAPLNKPKSVNFFFKLSFVLSSMLLI--DDMYNVLLHPLITV 189
TS TN S+P + + + + + +LSS LL+ ++ N +LHP + V
Sbjct: 692 TSTTNTSSPYRRAEQLVVYVRALHMLSSALLLAQTNVANRVLHPSVAV 739
>Z81116-14|CAB03310.2| 335|Caenorhabditis elegans Hypothetical
protein K08G2.8 protein.
Length = 335
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 25 FMVMVLGVVTSATNISAPLNKPKSVNFFFKLSFVLSSMLLI 147
F+ ++ G++ A +I P +NF+F L VLS++L++
Sbjct: 258 FVPIIAGMIFKALSIVNPQAFSNLLNFYFSLHGVLSTILML 298
>Z81100-6|CAB03195.2| 335|Caenorhabditis elegans Hypothetical
protein K08G2.8 protein.
Length = 335
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 25 FMVMVLGVVTSATNISAPLNKPKSVNFFFKLSFVLSSMLLI 147
F+ ++ G++ A +I P +NF+F L VLS++L++
Sbjct: 258 FVPIIAGMIFKALSIVNPQAFSNLLNFYFSLHGVLSTILML 298
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,800,241
Number of Sequences: 27780
Number of extensions: 370009
Number of successful extensions: 894
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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