Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16d17
         (798 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0161 + 18635635-18635788,18637117-18637295,18638032-186381...    30   2.5  
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572...    29   3.2  
01_07_0230 + 42170382-42170408,42170532-42170648,42171930-421721...    29   4.3  
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747...    29   4.3  

>05_04_0161 +
           18635635-18635788,18637117-18637295,18638032-18638145,
           18638274-18638368,18638604-18638710,18639455-18639528,
           18641170-18641400,18641892-18642197
          Length = 419

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 200 PMSSTGQLWADDDDGDKAQLPKFVAILFQVSKNPIPSS 87
           P++S GQ WA  D   + QL    A++  +S  P+P++
Sbjct: 350 PINSRGQAWASFDGKGRKQLGPGDALICSISPWPVPTA 387


>08_01_0663 +
           5721902-5723176,5724162-5724233,5724405-5724560,
           5724655-5724844,5725173-5725255
          Length = 591

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/79 (22%), Positives = 36/79 (45%)
 Frame = +1

Query: 433 FIYRRLTSNTENVYVISLGLRSIYVPQYYRLFNTNSVLAPVSTALRQCATQLRLTSTHGT 612
           F+YR L +   +  V +L LRS    +Y  +++ + V   +S+A+++ A  + L      
Sbjct: 134 FVYRLLLAREVSAPVDTLRLRSSNGEEYAEMYDNDDVNMWISSAIKRNARVIHLNGHRED 193

Query: 613 KRCKIEFQKYTSSNYTVAK 669
               +E   + S    + K
Sbjct: 194 DDLVLEHTAFVSQRLKILK 212


>01_07_0230 +
           42170382-42170408,42170532-42170648,42171930-42172119,
           42172250-42172369,42172448-42172740,42172872-42172966,
           42173075-42173181,42173514-42173602,42173809-42173895,
           42174053-42174077,42174659-42174966,42175352-42175657
          Length = 587

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 200 PMSSTGQLWADDDDGDKAQLPKFVAILFQVSKNPIPSS 87
           P +S GQ WA  D  D+  L    A++  +S  P+P++
Sbjct: 518 PHNSRGQAWASFDGKDRKLLSPGDALICSISPWPVPTA 555


>01_01_0953 -
           7472173-7472178,7472216-7472311,7472370-7472462,
           7472855-7473019,7473689-7474821,7474902-7475426,
           7477077-7477249,7478737-7478831,7478893-7481688
          Length = 1693

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/48 (25%), Positives = 27/48 (56%)
 Frame = -1

Query: 150 SSTTEIRSYFIPSLEKSYSFFPLSPTLNKLWTMRYITL*LQPYINIIN 7
           SST +   Y + +L ++ SF  ++P +N++W+  +  L  +  +  +N
Sbjct: 751 SSTEDSAFYMLNTLVENVSFDIMNPHINEIWSALFTRLQTRQAVKFVN 798


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,593,919
Number of Sequences: 37544
Number of extensions: 339112
Number of successful extensions: 657
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)