Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16d17
(798 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 36 0.034
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 36 0.034
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 36 0.034
U23168-12|AAC38812.2| 443|Caenorhabditis elegans Hypothetical p... 30 1.7
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z66523-8|CAE17855.1| 155|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z70783-3|CAA94853.4| 755|Caenorhabditis elegans Hypothetical pr... 28 8.9
AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal pro... 28 8.9
AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal pro... 28 8.9
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 35.9 bits (79), Expect = 0.034
Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Frame = +1
Query: 415 NLNIISF-IYRRLTSNTENVYVISLGL------RSIYVPQYYRLFNTNSVLAPV---STA 564
NLN IS IY+ LTSN N Y + G Y YY F+ N+ LA + STA
Sbjct: 398 NLNAISSAIYKELTSNDGNNYEVYKGFVIVKFANGAYTNTYYPAFDQNAFLAAINQASTA 457
Query: 565 LRQCA 579
+ QC+
Sbjct: 458 VGQCS 462
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 35.9 bits (79), Expect = 0.034
Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Frame = +1
Query: 415 NLNIISF-IYRRLTSNTENVYVISLGL------RSIYVPQYYRLFNTNSVLAPV---STA 564
NLN IS IY+ LTSN N Y + G Y YY F+ N+ LA + STA
Sbjct: 398 NLNAISSAIYKELTSNDGNNYEVYKGFVIVKFANGAYTNTYYPAFDQNAFLAAINQASTA 457
Query: 565 LRQCA 579
+ QC+
Sbjct: 458 VGQCS 462
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 35.9 bits (79), Expect = 0.034
Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Frame = +1
Query: 415 NLNIISF-IYRRLTSNTENVYVISLGL------RSIYVPQYYRLFNTNSVLAPV---STA 564
NLN IS IY+ LTSN N Y + G Y YY F+ N+ LA + STA
Sbjct: 398 NLNAISSAIYKELTSNDGNNYEVYKGFVIVKFANGAYTNTYYPAFDQNAFLAAINQASTA 457
Query: 565 LRQCA 579
+ QC+
Sbjct: 458 VGQCS 462
>U23168-12|AAC38812.2| 443|Caenorhabditis elegans Hypothetical
protein B0228.9 protein.
Length = 443
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -1
Query: 159 WR*SSTTEIRSYFIPSLEKSYSFFPLSPTLNKLWTMRYIT 40
W +TT+ R +I ++K+ +FP + L LW + ++T
Sbjct: 248 WTADNTTQFRDTYIFRVKKAEDYFPENDRLYLLWKIYWVT 287
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -2
Query: 218 GVD*ERPMSSTGQLWADDDDGDKAQLPKFVA 126
G D E+P SS+ +L ADDDD ++ +L F+A
Sbjct: 98 GSDDEKPASSSSKLAADDDD-EEDELDAFMA 127
>Z66523-8|CAE17855.1| 155|Caenorhabditis elegans Hypothetical
protein M05D6.8 protein.
Length = 155
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 610 TKRCKIEFQKYTSSNYTVAKC 672
T RC+ FQ+Y S N + KC
Sbjct: 134 TSRCRDSFQRYKSKNIAIRKC 154
>Z70783-3|CAA94853.4| 755|Caenorhabditis elegans Hypothetical
protein ZK856.5 protein.
Length = 755
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 461 LKMFMLLV*AYA-LFMYLSITVYLIQTQYSHQSRLRYDNAPH-NSG*RAPTERNDVRLNF 634
+ +F L Y LF++LS + +++ Q RY N+ + + + + +N + +N
Sbjct: 444 IPLFSLFAIIYTELFLFLSFSKWVLHFQLFSDIHTRYKNSTYQHPKKKEKSPKNAILINL 503
Query: 635 KNT 643
KNT
Sbjct: 504 KNT 506
>AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform b protein.
Length = 159
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 554 SRLRYDNAPHNSG*RAPTERNDVRLNFKNT 643
+++ Y AP NS +D+R++FKNT
Sbjct: 2 TKVHYSRAPENSTKSCKARGSDLRVHFKNT 31
>AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform a protein.
Length = 187
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 554 SRLRYDNAPHNSG*RAPTERNDVRLNFKNT 643
+++ Y AP NS +D+R++FKNT
Sbjct: 2 TKVHYSRAPENSTKSCKARGSDLRVHFKNT 31
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,657,472
Number of Sequences: 27780
Number of extensions: 325131
Number of successful extensions: 628
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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