Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16d17
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.62 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.62 
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           24   1.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   4.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 481 SLGLRSIYVPQYYR-LFNTNSVLAPVSTALRQCATQLRLTSTHGTKRCKIEFQ 636
           S+  +++ +P +Y  L+   ++L  V   L+       L   H T+ CK++ +
Sbjct: 130 SVTFQTMTIPNHYLWLYKDKTILYMVKLTLKLSCAMNFLIYPHDTQECKLQME 182


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 619 CKIEFQKYTSSNYTVAKCEC*NIRLY 696
           C    + Y+S+N T+ KC+  N R Y
Sbjct: 656 CSEISESYSSNNKTLCKCDAQNCRRY 681


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 286 HHLKNNQA*IKLKYEESRRPSSVVSIKRGLCPALDNCG 173
           H +K  QA +   YE+  +P    S+   L   L +CG
Sbjct: 88  HCMKTTQAVVVSLYEDPIQPQQAASVVEKLGDYLVSCG 125


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 646 SSNYTVAKCEC*NIRLYAIQLFNELFNRRNGGKGVKDDVY 765
           S  ++ + C C +     I+ FNE  NRRN   G  +  Y
Sbjct: 348 SRRHSDSCCLCLDSMNAVIRNFNESENRRNSCLGSTETYY 387


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 661 VAKCEC*NIRLYAIQLFNELFNRRNGGKG 747
           VA+C    +R+Y   + N +   RN   G
Sbjct: 101 VARCNKAGVRIYVDVIMNHMSGDRNDAHG 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,096
Number of Sequences: 438
Number of extensions: 4303
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)