Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16d13
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    33   0.062
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    29   1.0  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    29   1.0  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    28   1.8  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    27   3.1  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    27   3.1  
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo...    26   5.4  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    26   5.4  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    26   5.4  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    26   7.2  
SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces pombe...    26   7.2  
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    25   9.5  

>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 32.7 bits (71), Expect = 0.062
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = +3

Query: 366 VYAFPN---WVMWYIRFYYALYVSTSTSHC 446
           +YA+P+   W++W IR  Y +YV+ S  +C
Sbjct: 124 IYAYPDTGEWMVWVIRILYYIYVAVSFIYC 153


>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 518 DCTLNEMKSYSDVHKVEYLACEMETMASTRGDIQCIVKSNVPHDPV 381
           D  L E       H V ++A E++T  +  G + CI  SNV  D V
Sbjct: 226 DGYLEEAYKLCKAHNVLFIADEVQTGVARTGKMLCIEHSNVKPDVV 271


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 2/130 (1%)
 Frame = -1

Query: 743 GVDLKRKVQLSVFYESACSDSKHFILEQLHPTIHKLEDYIDLQLIPFGKASSINNGGDGF 564
           G D +   QL V   S+ S+  +     L P   + +D  DL    F +A S+       
Sbjct: 161 GKDSEPDRQLFVGNVSSISNPLYSFPRTLLPYNVRWQDLKDL----FRQAGSVIRADIQM 216

Query: 563 ECQHGPPECFGNLIQDCTLNEMKSYSDVHKVEYLACEMETMAS--TRGDIQCIVKSNVPH 390
             Q G     G ++       M +   +H  +++   +E          I+ +V    PH
Sbjct: 217 N-QEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRLDRFAHHKIEDLVYHAYPH 275

Query: 389 DPVRECVYLG 360
            P  +C+Y+G
Sbjct: 276 GPCSDCIYVG 285


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +3

Query: 369 YAFP---NWVMWYIRFYYALYVSTSTSHCFHFTGQVFH 473
           YAFP    W++W IR  Y ++V+ +          +FH
Sbjct: 121 YAFPYTGEWMVWLIRILYWIFVAVACIFVISLFYSLFH 158


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 384 WVMWYIRFYYALYVSTSTSHCFHFT 458
           W   + RFYY  YV  +T H F  T
Sbjct: 459 WSKRFSRFYYGHYVFVNTCHNFFLT 483


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +1

Query: 37  LLEYQVKYIKYFIVKCKYNHNTAKVTTVFSF*GRFILRCTIYNHYLFLKYSLQGLTFLSL 216
           L  Y+++Y + F +  + NH  A +T V+ F      RC I       K      TF++ 
Sbjct: 291 LFLYKIRYPENFFL-LRGNHECANITRVYGFYDECKRRCNI----KIWK------TFINT 339

Query: 217 SQIVPIKSLKA--LFCVA*SKTPS 282
              +PI S+ A  +FCV    +PS
Sbjct: 340 FNCLPIASVVAGKIFCVHGGLSPS 363


>SPBC582.07c |rpn7||19S proteasome regulatory subunit
           Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 266 QATQNKAFNDLMGTICDRLRNVKPCKEYF 180
           +A +NKA  D    ICDR R V+ C E F
Sbjct: 113 EAMKNKA--DYYTNICDRERGVQLCDETF 139


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 34  FLLEYQVKYIKYFIVKCKYNHNTAKVTTVFSF 129
           FL+ Y  + + +F +  K++ N+ K   +FSF
Sbjct: 30  FLILYSQEILSFFFMCSKFSMNSLKFCVLFSF 61


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 113 VTLAVLWLYLHFTIKYFIYF 54
           +T  VLWL+L F +  +IY+
Sbjct: 253 ITYLVLWLFLSFLLALWIYY 272


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -1

Query: 413 IVKSNVPHDPVRECVYLGPGTLLQ--LDSERLTKLVNPKFIPTIVLDGVFDQATQNKA 246
           I K+ V    V    +LGP  L    +  ERL  L+N  F  T+ +D   D+   + A
Sbjct: 321 ITKTTVLRSGVPVYTFLGPKCLTDGSVSWERLWVLINDSFKRTLDMDAYLDRLKNSLA 378


>SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 148

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -1

Query: 308 PKFIPTIVLDGV-FDQATQNKAFNDLMGTICDRLRNVKPCKEY 183
           P   P+ +L G+ FD A     +  LMG I  R  +  P  EY
Sbjct: 8   PYVRPSAILLGIAFDHAASFLVYGPLMGDIWKRAMSTAPHVEY 50


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +1

Query: 310 LTSFVKRSESSCSNVPGPK---YTHSRTGSCGTFDFTMH 417
           + SFV R++S C +  GPK    T  RT   G    +MH
Sbjct: 393 IQSFVVRNDSPCGSTIGPKLAAMTGMRTLDLGNPMLSMH 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,564,048
Number of Sequences: 5004
Number of extensions: 79432
Number of successful extensions: 211
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)