Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16d13
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267... 71 1e-12
01_06_1209 + 35427160-35427318,35427436-35427501,35427737-354278... 64 1e-10
03_02_0673 - 10328994-10329281 36 0.050
10_07_0081 - 12716130-12716271,12716367-12716449,12716729-127167... 28 7.5
11_06_0128 - 20389375-20389781,20389988-20392787 28 9.9
03_05_1161 - 30831043-30831151,30831641-30831759,30831880-308319... 28 9.9
>03_02_0672 -
10325935-10326150,10326308-10326400,10326568-10326708,
10326828-10326893,10327099-10327359
Length = 258
Score = 70.5 bits (165), Expect = 1e-12
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 3/153 (1%)
Frame = -1
Query: 725 KVQLSVFYESACSDSKHFILEQLHPTIHK-LEDYIDLQLIPFGKASSINNGGDGFECQHG 549
KV ++++YES C S F++ L L D +DL L+P+G A + +G + +HG
Sbjct: 31 KVDVALYYESLCPYSAMFVVGSLAKVFRDGLLDAVDLSLVPYGNAR-VKDGKISCQVEHG 89
Query: 548 PPECFGNLIQDCTLNEMKSYSDVHKVEYLACEMETMASTRGDIQCIVKSNVPHDPVRECV 369
ECF N ++ C ++ + Y ++ R C K N+ PV +C
Sbjct: 90 SEECFLNTVEACAIDAWPDLRVHFRFIYCVEDLVVNHKQREWESCFGKLNLDPKPVTDCY 149
Query: 368 YLGPGTLLQLDSERLTKLVNP--KFIPTIVLDG 276
G L L R T + P K++P +V+DG
Sbjct: 150 KGERGHQLSLKYGRQTDALQPPHKYVPWVVVDG 182
>01_06_1209 +
35427160-35427318,35427436-35427501,35427737-35427877,
35428342-35428434,35428530-35428646,35428890-35429054
Length = 246
Score = 64.1 bits (149), Expect = 1e-10
Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 7/154 (4%)
Frame = -1
Query: 716 LSVFYESACSDSKHFILEQLHPTIHK-LEDYIDLQLIPFGKASSINNGGDGFECQHGPPE 540
+SV+YE+ C F++ L L +DL+L+PFG +G CQHG E
Sbjct: 1 MSVYYETLCPFCSGFVVNDLARIFRDGLSPVVDLRLVPFGNGRVSPDGS--ITCQHGEEE 58
Query: 539 CFGNLIQDCTL----NEMKSYSDVHKVEYLACEMETMASTRGDIQCIVKSNVPHDPVREC 372
C N I+ C + + + + ++ +E+LA + A C ++ + PV +C
Sbjct: 59 CQLNAIEACVIRLWPDAEQHFPFINCIEHLALTQKWNAWQ----SCFQETGLASQPVMDC 114
Query: 371 VYLGPGTLLQLDSERLTKLVNP--KFIPTIVLDG 276
G GT LQL T + P +F+P + ++G
Sbjct: 115 YNSGYGTQLQLQYAAETNALQPPHQFVPWVTVNG 148
>03_02_0673 - 10328994-10329281
Length = 95
Score = 35.5 bits (78), Expect = 0.050
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -1
Query: 725 KVQLSVFYESACSDSKHFILEQLHPTIHK-LEDYIDLQLIPFGKASSINNGGDGFECQ 555
KV L+++YE+ C FI+ L + D +DL+L+P+G A + + CQ
Sbjct: 38 KVPLALYYETLCPYCSRFIVNHLAGIFEDGIVDAVDLRLVPYGNAHVV-GANNTISCQ 94
>10_07_0081 -
12716130-12716271,12716367-12716449,12716729-12716785,
12716886-12716942,12717014-12717113,12717204-12717274,
12718284-12718460,12719142-12719312,12722151-12722234,
12722310-12722354,12722447-12722537,12722745-12722863,
12723213-12723434,12723630-12723854,12725366-12725571,
12726081-12726258,12726702-12726762,12727930-12728039,
12728126-12728257,12729136-12729208,12729608-12729645,
12730373-12730474,12730565-12730622,12731071-12731172,
12731240-12731386,12732023-12732159,12732256-12732405,
12733103-12733259,12733615-12733673,12733982-12734138,
12734209-12734354,12739177-12739320,12739478-12739606
Length = 1309
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 675 VFAVRASAFIKNRKLDLSFQVNSYTENGQNHVKYLQKTSYFL 800
+ A++ +KN K QV S +N +HV Y KT +++
Sbjct: 743 MLAIQKLLQLKNNKAATIIQVQSMHQNIYSHVAYTVKTMFYI 784
>11_06_0128 - 20389375-20389781,20389988-20392787
Length = 1068
Score = 27.9 bits (59), Expect = 9.9
Identities = 24/82 (29%), Positives = 38/82 (46%)
Frame = -1
Query: 446 TMASTRGDIQCIVKSNVPHDPVRECVYLGPGTLLQLDSERLTKLVNPKFIPTIVLDGVFD 267
T+ S+ G +Q + +VP + + V L G L +L S L IP+ V + +
Sbjct: 449 TLPSSLGRLQNLNLLSVPKNKISGSVPLAIGNLTKLSSLELQANAFSGEIPSTVAN-LTK 507
Query: 266 QATQNKAFNDLMGTICDRLRNV 201
+ N A N+ G I RL N+
Sbjct: 508 LSALNLARNNFTGAIPRRLFNI 529
>03_05_1161 -
30831043-30831151,30831641-30831759,30831880-30831906,
30832117-30832158,30832293-30832392,30832481-30832545,
30832619-30832694,30832878-30832939,30833248-30833253,
30834704-30834782,30834890-30834957
Length = 250
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 712 RFFMKALALTANTLYWSNYIRLYINLKTISTCSSYLLG 599
+FF+ ++AN + Y +L ++TI C +L+G
Sbjct: 86 QFFLAIFQISANGNWCHEYRKLKAKVETIQKCQKHLMG 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,494,213
Number of Sequences: 37544
Number of extensions: 461895
Number of successful extensions: 1048
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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