Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16d13
(800 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81534-4|CAB04345.1| 277|Caenorhabditis elegans Hypothetical pr... 76 3e-14
L16622-5|ABC71836.1| 263|Caenorhabditis elegans Hypothetical pr... 73 2e-13
L16622-4|AAA27914.1| 323|Caenorhabditis elegans Hypothetical pr... 73 2e-13
AF077534-7|AAK71376.1| 319|Caenorhabditis elegans Prion-like-(q... 59 3e-09
Z32683-12|CAA83624.2| 186|Caenorhabditis elegans Hypothetical p... 59 4e-09
Z37093-1|CAA85467.1| 264|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z37093-2|CAA85464.1| 218|Caenorhabditis elegans Hypothetical pr... 43 2e-04
AC024753-11|AAF60461.1| 369|Caenorhabditis elegans Hypothetical... 32 0.55
Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical pr... 31 0.73
Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical pr... 31 0.73
Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical p... 31 0.73
Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical pr... 31 0.73
AL034393-2|CAA22309.1| 220|Caenorhabditis elegans Hypothetical ... 29 3.9
AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical ... 29 3.9
U13642-2|AAG00042.2| 430|Caenorhabditis elegans Abnormal growth... 29 5.1
AY052773-1|AAL14112.1| 430|Caenorhabditis elegans tRNA isopente... 29 5.1
Z81139-4|CAB03479.2| 358|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z66520-7|CAA91384.1| 286|Caenorhabditis elegans Hypothetical pr... 28 8.9
U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein ... 28 8.9
EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transport... 28 8.9
>Z81534-4|CAB04345.1| 277|Caenorhabditis elegans Hypothetical
protein F37H8.5 protein.
Length = 277
Score = 75.8 bits (178), Expect = 3e-14
Identities = 49/180 (27%), Positives = 90/180 (50%), Gaps = 9/180 (5%)
Frame = -1
Query: 728 RKVQLSVFYESACSDSKHFILEQLHPTIHK-LEDYIDLQLIPFGKASSINNGGDGFECQH 552
+K+ ++V E+ C D ++F+ +QL+P + K +Y++++L+PFG A + +G +CQH
Sbjct: 74 QKINITVLIEALCPDCQNFLTKQLYPIVFKNFANYVNIELVPFGNAKVLEDG--TIKCQH 131
Query: 551 GPPECFGNLIQDCTLNEMKSYSDVHKVEYLACEMETMASTRGDI-QCIVKSNVPHDPVR- 378
G EC N + C ++ M+ S + + + ++ + QC K + D R
Sbjct: 132 GEEECSINKFEGCFIDSMQDQSPLPTLSCIEESLQKKVEFADAVQQCFEKLQIGGDIQRL 191
Query: 377 --ECVYLGPGTLLQLDSERLTKLVNP---KFIPTIVLDGVFDQATQNKAF-NDLMGTICD 216
C+ G LQ + T V P KF+P ++++GV T + F N L +C+
Sbjct: 192 TQSCLVSKLGADLQNKAAAATANVWPEQHKFVPWVIINGV--SLTSFQGFQNQLPTLLCE 249
>L16622-5|ABC71836.1| 263|Caenorhabditis elegans Hypothetical
protein C02D5.2b protein.
Length = 263
Score = 73.3 bits (172), Expect = 2e-13
Identities = 59/192 (30%), Positives = 94/192 (48%), Gaps = 9/192 (4%)
Frame = -1
Query: 722 VQLSVFYESACSDSKHFILEQLHPTIHKLE--DYIDLQLIPFGKASSINNGGDGFECQ-- 555
V+L V+ E+ C D+ F +QL L + I+L +IPFGKA G D FECQ
Sbjct: 79 VKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKARCTEKGND-FECQCQ 137
Query: 554 HGPPECFGNLIQDCTLNEMKSYSDVHKVEYLACEMETMASTRGDIQCIVKSNVP--HDPV 381
HGP EC N + +C ++ + H+ M+ S ++C+ + N P ++ +
Sbjct: 138 HGPTECQINQLMNCVIDR---FGFPHRYLPGVLCMQGKYSLDEAMKCVTE-NYPSEYERM 193
Query: 380 RECVYLGPGTLLQLDSERLTKLVNP--KFIPTIVLDGVFDQATQNKAFNDLMGTICDRLR 207
REC G L S + T + P FIP IV++G + + A DL +C+ ++
Sbjct: 194 RECASGTRGRRLLALSGQKTASLTPAIDFIPWIVING----SRNSDALYDLTQNVCEAMQ 249
Query: 206 NV-KPCKEYFRN 174
+ CK+Y R+
Sbjct: 250 PMPSACKDYLRS 261
>L16622-4|AAA27914.1| 323|Caenorhabditis elegans Hypothetical
protein C02D5.2a protein.
Length = 323
Score = 73.3 bits (172), Expect = 2e-13
Identities = 59/192 (30%), Positives = 94/192 (48%), Gaps = 9/192 (4%)
Frame = -1
Query: 722 VQLSVFYESACSDSKHFILEQLHPTIHKLE--DYIDLQLIPFGKASSINNGGDGFECQ-- 555
V+L V+ E+ C D+ F +QL L + I+L +IPFGKA G D FECQ
Sbjct: 139 VKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKARCTEKGND-FECQCQ 197
Query: 554 HGPPECFGNLIQDCTLNEMKSYSDVHKVEYLACEMETMASTRGDIQCIVKSNVP--HDPV 381
HGP EC N + +C ++ + H+ M+ S ++C+ + N P ++ +
Sbjct: 198 HGPTECQINQLMNCVIDR---FGFPHRYLPGVLCMQGKYSLDEAMKCVTE-NYPSEYERM 253
Query: 380 RECVYLGPGTLLQLDSERLTKLVNP--KFIPTIVLDGVFDQATQNKAFNDLMGTICDRLR 207
REC G L S + T + P FIP IV++G + + A DL +C+ ++
Sbjct: 254 RECASGTRGRRLLALSGQKTASLTPAIDFIPWIVING----SRNSDALYDLTQNVCEAMQ 309
Query: 206 NV-KPCKEYFRN 174
+ CK+Y R+
Sbjct: 310 PMPSACKDYLRS 321
>AF077534-7|AAK71376.1| 319|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 48
protein.
Length = 319
Score = 59.3 bits (137), Expect = 3e-09
Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
Frame = -1
Query: 749 CIGVDLKRK-VQLSVFYESACSDSKHFILEQLHPTIHKLEDYIDLQLIPFGKASSINNGG 573
C G+ +R+ +++++ YE+ C + FI QL ++ + + L+L+P+G + + +G
Sbjct: 131 CDGLRHRRQPIKITLIYEALCPYCQKFIANQLGSVFNQFQGQLILELVPWGNSRIMRDG- 189
Query: 572 DGFECQHGPPECFGNLIQDCTLNEMKSYSDVHKVEYLACEMETMASTRGDIQCIVKSNVP 393
F C HG EC N +Q C ++ +K + + ++ C
Sbjct: 190 -SFSCNHGQKECDANRLQSCVIDILKVKGALPFIVCFERNIQHYGVEHAMQTCSAFIRSQ 248
Query: 392 HDPVRECVYLGP-GTLLQLDSERLTKLVNP 306
+ +R+C Y GP G LQ ++ + T P
Sbjct: 249 YRQIRQC-YDGPRGVQLQREAAQKTMSTRP 277
>Z32683-12|CAA83624.2| 186|Caenorhabditis elegans Hypothetical
protein R07E5.4 protein.
Length = 186
Score = 58.8 bits (136), Expect = 4e-09
Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 4/170 (2%)
Frame = -1
Query: 767 VILAVFCIGVDLK-RKVQLSVFYESACSDSKHFILEQLHPTIHKLEDYIDLQLIPFGKAS 591
V+L F V L+ ++V +++F ES C + EQ+ P ++LQ++PFGK
Sbjct: 3 VLLVAFLFPVLLQAQQVNVTIFTESQCPYCTKLLREQIWPFYVNRPGIMNLQIVPFGKGD 62
Query: 590 SINNGGDGFE--CQHGPPECFGNLIQDCTLNEMKSYSDVHKVEYLACEMETMASTRGDIQ 417
+ F C HG EC N +Q+C + SY + + C G +
Sbjct: 63 CTYDYNRNFHCTCMHGATECDLNRLQNCAI----SYFPRRHLGLVTCLQGLTTLREGFSK 118
Query: 416 CIVK-SNVPHDPVRECVYLGPGTLLQLDSERLTKLVNPKFIPTIVLDGVF 270
C+ + S + EC G LL S T + PT+ ++GVF
Sbjct: 119 CLSRLSPNTQRKLIECATTQTGELLNYYSMVNTHRAGVRIWPTMYVNGVF 168
>Z37093-1|CAA85467.1| 264|Caenorhabditis elegans Hypothetical
protein ZK669.2 protein.
Length = 264
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = -1
Query: 722 VQLSVFYESACSDSKHFILEQLHPTIHKLE--DYIDLQLIPFGKASSINNGGDGFEC--Q 555
+ + F ES C D+ + + P L+ I++ PFG AS + G C Q
Sbjct: 74 INIEFFGESLCPDTTRYFRNHIMPVWTSLQASSTINITYHPFGLASCRRSAETGIRCNCQ 133
Query: 554 HGPPECFGNLIQDCTLNEMK 495
HGP EC N++Q C ++ ++
Sbjct: 134 HGPAECQLNMLQACVISTLQ 153
>Z37093-2|CAA85464.1| 218|Caenorhabditis elegans Hypothetical
protein ZK669.3 protein.
Length = 218
Score = 43.2 bits (97), Expect = 2e-04
Identities = 42/185 (22%), Positives = 79/185 (42%), Gaps = 9/185 (4%)
Frame = -1
Query: 722 VQLSVFYESACSDSKHFILEQLHPTIHKLEDY--IDLQLIPFG-KASSINN-GGDGF--E 561
V + F E CSD+ +++ P L I+ P+G K + +++ D +
Sbjct: 31 VNIVAFGEGRCSDTSYWMKWHWLPMWRMLGSTGRINFDYHPYGIKTTCVDSESADDVVCD 90
Query: 560 CQHGPPECFGNLIQDCTLNEMKSYSDVHKVEYLAC-EMETMASTRGDIQCIVKSNVPHDP 384
C HG EC N +Q C + + ++ D +E + C + + S ++ + +
Sbjct: 91 CHHGNRECLLNQLQACVIEALPNFEDY--MEVVTCIQGKQNISMAAEVCFEGPTKLDRTK 148
Query: 383 VRECVYLGPGTLLQLDSERLTKLVNPK--FIPTIVLDGVFDQATQNKAFNDLMGTICDRL 210
+ EC G L D E + + P+ + P I+++G +A DL +CDR
Sbjct: 149 MMECAESRHGRKLFSDQENIVAQMAPEMDWAPWILING----TRYKEAEEDLWQFLCDRF 204
Query: 209 RNVKP 195
+ +P
Sbjct: 205 IDPRP 209
>AC024753-11|AAF60461.1| 369|Caenorhabditis elegans Hypothetical
protein Y23H5B.1 protein.
Length = 369
Score = 31.9 bits (69), Expect = 0.55
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -1
Query: 731 KRKVQLSVFYESACSDSKHFILEQLHPT---IHKLEDYIDLQLIPFGKASSINNG 576
K + +LS+ Y+ + + LEQLHPT I KL ++++ +P + + N G
Sbjct: 52 KNRERLSLLYKCQEATDCYMKLEQLHPTSKEIKKLVNFVERNQVPICQILNFNTG 106
>Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical
protein C18D4.2b protein.
Length = 1376
Score = 31.5 bits (68), Expect = 0.73
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 655 CNCSNIKCLLSEQALS*KTESWTFLFKSTPIQK 753
C C N+KC + E + +T+ W KSTP +K
Sbjct: 184 CRCENLKCYIYESRIEIQTKEW----KSTPSEK 212
>Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical
protein C18D4.2a protein.
Length = 1817
Score = 31.5 bits (68), Expect = 0.73
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 655 CNCSNIKCLLSEQALS*KTESWTFLFKSTPIQK 753
C C N+KC + E + +T+ W KSTP +K
Sbjct: 184 CRCENLKCYIYESRIEIQTKEW----KSTPSEK 212
>Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical
protein C18D4.2b protein.
Length = 1376
Score = 31.5 bits (68), Expect = 0.73
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 655 CNCSNIKCLLSEQALS*KTESWTFLFKSTPIQK 753
C C N+KC + E + +T+ W KSTP +K
Sbjct: 184 CRCENLKCYIYESRIEIQTKEW----KSTPSEK 212
>Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical
protein C18D4.2a protein.
Length = 1817
Score = 31.5 bits (68), Expect = 0.73
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 655 CNCSNIKCLLSEQALS*KTESWTFLFKSTPIQK 753
C C N+KC + E + +T+ W KSTP +K
Sbjct: 184 CRCENLKCYIYESRIEIQTKEW----KSTPSEK 212
>AL034393-2|CAA22309.1| 220|Caenorhabditis elegans Hypothetical
protein Y18D10A.2 protein.
Length = 220
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Frame = -1
Query: 716 LSVFYESACSDSKHFILEQLHPTIHKLEDYIDLQL-IPFGKASSINNGGDGF---ECQHG 549
+ VF S C D+ FI QL P + + L + F + + DG C HG
Sbjct: 39 VEVFGISRCPDTSKFIHNQLVPFYQNYKGNLSDGLKLDFHAVPTGGHQVDGKYVNRCLHG 98
Query: 548 PPECFGNLIQDCTLNEMK 495
EC N +Q C+ +K
Sbjct: 99 ALECALNKLQMCSKKHIK 116
>AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical
protein R06B10.1 protein.
Length = 1236
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = -1
Query: 767 VILAVFCIGVDLKRKVQLSVFYESACSDSKHFILEQLHPTIHKLEDYIDLQLIPFGKASS 588
+I A IG+ L+ + L+++ + SK L L + K+E+ ID L ASS
Sbjct: 1169 IIAASSMIGIRLQILLALTIWLAETGAASKRKNLRSLFMNLTKMENQIDPFLSILNLASS 1228
Query: 587 IN 582
IN
Sbjct: 1229 IN 1230
>U13642-2|AAG00042.2| 430|Caenorhabditis elegans Abnormal growth
rate protein 1 protein.
Length = 430
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 600 EGIEYKQWWGRIRMSTWTARMLREPNSRLHIERNEVIFRRS 478
EGI ++ W ++ + +L PN+R ++R IFR +
Sbjct: 157 EGISNQELWDELKKIDEKSALLLHPNNRYRVQRALQIFRET 197
>AY052773-1|AAL14112.1| 430|Caenorhabditis elegans tRNA isopentenyl
transferase protein.
Length = 430
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 600 EGIEYKQWWGRIRMSTWTARMLREPNSRLHIERNEVIFRRS 478
EGI ++ W ++ + +L PN+R ++R IFR +
Sbjct: 157 EGISNQELWDELKKIDEKSALLLHPNNRYRVQRALQIFRET 197
>Z81139-4|CAB03479.2| 358|Caenorhabditis elegans Hypothetical
protein W05H5.4 protein.
Length = 358
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -1
Query: 710 VFYESACSDSKHFILEQLHPTIHKL-EDYIDLQLIPFGKASSINNGGDGF 564
VFY+ K+ +L Q+H +H E Y + LIP SI DGF
Sbjct: 47 VFYKCKHFSKKYVVLLQIHLFLHFFGELYWTILLIPVIVIPSIGVSADGF 96
>Z66520-7|CAA91384.1| 286|Caenorhabditis elegans Hypothetical
protein F49E12.10 protein.
Length = 286
Score = 27.9 bits (59), Expect = 8.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 133 GRFILRCTIYNHYLFLKYSLQGLTF 207
G + RC + +HY+F Y++ TF
Sbjct: 175 GAVLFRCHVVSHYIFTSYAILTTTF 199
>U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein
related protein 2 protein.
Length = 1272
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -2
Query: 406 NRMYHMTQFGNAYTWVPEHCCNWIPNA*RNSLTQSSYPLSFWTGSSI 266
+R Y+ + G T + ++C I N SSY L+FW GS++
Sbjct: 281 DRFYNALEVGRQ-TGIVKYCYMGIGVGFSNLCMYSSYALAFWYGSTL 326
>EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transporter
PGP-2 protein.
Length = 1272
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -2
Query: 406 NRMYHMTQFGNAYTWVPEHCCNWIPNA*RNSLTQSSYPLSFWTGSSI 266
+R Y+ + G T + ++C I N SSY L+FW GS++
Sbjct: 281 DRFYNALEVGRQ-TGIVKYCYMGIGVGFSNLCMYSSYALAFWYGSTL 326
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,589,046
Number of Sequences: 27780
Number of extensions: 444707
Number of successful extensions: 1220
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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