Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16d13
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   4.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.8  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 111 YLGCVVVVFTFYN 73
           Y+ C+++VF +YN
Sbjct: 353 YIPCIIMVFLYYN 365


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 297 YELWVNEFR*AFGIQLQQCSG 359
           Y +  N+FR AF + L  C G
Sbjct: 348 YNIMSNKFREAFKLMLPNCCG 368


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 712 RFFMKALALTANTLYWSNYI 653
           RFF     L  N +YWS ++
Sbjct: 364 RFFFPFSFLILNVVYWSTFL 383


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -2

Query: 364 WVPEHCCNWIPNA*RNSLTQSSYPLSFWTGSS 269
           WVP  C N + +  +  ++  ++ +  W G S
Sbjct: 285 WVPFFCVNIVTSYCKTCISGRAFQVLTWLGYS 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,235
Number of Sequences: 438
Number of extensions: 5774
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)