Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16d10
         (267 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058377-1|AAL13606.1|  245|Drosophila melanogaster GH14327p pro...    36   0.010
AE014296-1418|AAF50446.1|  245|Drosophila melanogaster CG7188-PA...    36   0.010
AE014296-1419|AAN12018.1|  237|Drosophila melanogaster CG7188-PB...    31   0.17 

>AY058377-1|AAL13606.1|  245|Drosophila melanogaster GH14327p
           protein.
          Length = 245

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 16/24 (66%), Positives = 19/24 (79%)
 Frame = -2

Query: 77  ALELFIDFIGXFRRLVIILTXKEE 6
           AL+LF D +  FRRL+IILT KEE
Sbjct: 210 ALDLFFDVLSMFRRLLIILTQKEE 233



 Score = 29.9 bits (64), Expect = 0.51
 Identities = 16/67 (23%), Positives = 28/67 (41%)
 Frame = -1

Query: 267 GGTLTTXFTXXSLXTXXXXVXQSHFXYQAHAYLGFMFMCXVVLXXXQXXSXXRRMGSKDF 88
           GG L +     +L +    V +S+F      Y+G   M   ++   Q      R G++D 
Sbjct: 147 GGMLVSVINTMALLSLFNMVFKSYFVQVTQLYVGVFVMAAFIVYDTQNIVEKCRNGNRDV 206

Query: 87  VQXRIGI 67
           VQ  + +
Sbjct: 207 VQHALDL 213


>AE014296-1418|AAF50446.1|  245|Drosophila melanogaster CG7188-PA,
           isoform A protein.
          Length = 245

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 16/24 (66%), Positives = 19/24 (79%)
 Frame = -2

Query: 77  ALELFIDFIGXFRRLVIILTXKEE 6
           AL+LF D +  FRRL+IILT KEE
Sbjct: 210 ALDLFFDVLSMFRRLLIILTQKEE 233



 Score = 29.9 bits (64), Expect = 0.51
 Identities = 16/67 (23%), Positives = 28/67 (41%)
 Frame = -1

Query: 267 GGTLTTXFTXXSLXTXXXXVXQSHFXYQAHAYLGFMFMCXVVLXXXQXXSXXRRMGSKDF 88
           GG L +     +L +    V +S+F      Y+G   M   ++   Q      R G++D 
Sbjct: 147 GGMLVSVINTMALLSLFNMVFKSYFVQVTQLYVGVFVMAAFIVYDTQNIVEKCRNGNRDV 206

Query: 87  VQXRIGI 67
           VQ  + +
Sbjct: 207 VQHALDL 213


>AE014296-1419|AAN12018.1|  237|Drosophila melanogaster CG7188-PB,
           isoform B protein.
          Length = 237

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = -2

Query: 77  ALELFIDFIGXFRRLVIILTXK 12
           AL+LF D +  FRRL+IILT K
Sbjct: 210 ALDLFFDVLSMFRRLLIILTQK 231



 Score = 29.9 bits (64), Expect = 0.51
 Identities = 16/67 (23%), Positives = 28/67 (41%)
 Frame = -1

Query: 267 GGTLTTXFTXXSLXTXXXXVXQSHFXYQAHAYLGFMFMCXVVLXXXQXXSXXRRMGSKDF 88
           GG L +     +L +    V +S+F      Y+G   M   ++   Q      R G++D 
Sbjct: 147 GGMLVSVINTMALLSLFNMVFKSYFVQVTQLYVGVFVMAAFIVYDTQNIVEKCRNGNRDV 206

Query: 87  VQXRIGI 67
           VQ  + +
Sbjct: 207 VQHALDL 213


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,470,396
Number of Sequences: 53049
Number of extensions: 87143
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 24,988,368
effective HSP length: 67
effective length of database: 21,434,085
effective search space used: 450115785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)