Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16d07
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    31   0.18 
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    29   0.71 
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    29   0.94 
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|...    28   1.2  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    28   1.2  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    27   3.8  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    27   3.8  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    26   5.0  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   5.0  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    26   6.6  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   8.8  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    25   8.8  

>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = -2

Query: 472 WTKDKPEISNKTYHFYQIFNETMQCIEDNINPK----ENSTKVCENCMQSYIQLNNYYE 308
           W   +P I   T  F+Q+ NET   ++D ++      EN+T V EN   +++    +YE
Sbjct: 168 WLSMEPFI---TPSFFQVKNETAYLVKDELSLHAYLGENATSVIENHYNTFVTKQTFYE 223


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
 Frame = -2

Query: 637 YVKFRESYKNLLQTN-LNGTSCETIFISHDRLEVVLNYHDNILAIWNKGNCNDCFNWTKD 461
           Y+K+R ++K     N L+ +  E  +  +D+ + +L     +     K  C DC  W   
Sbjct: 107 YLKYRRTHKKESDENQLSSSDLEKTY--YDKEQEILGCSHYMRNC--KVQCFDCHEWYTC 162

Query: 460 KPEISNKTYHFYQI-FNETMQC-IEDNINPKENSTKVCENCMQSY 332
           +   ++   H  +    E M C I   + P     K C+NCM  Y
Sbjct: 163 RHCHNDACDHVLERPAVENMLCMICSKVQPAAQYCKYCKNCMGRY 207


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = -2

Query: 646 IDHYVKFRESY------KNLLQTNLNGTSCETIFISHDRLEVVLNYHDNILAIWN 500
           +D Y++  E Y      K LL    +      +   HD L+V+LN+HD I  ++N
Sbjct: 683 LDTYIEAHEKYVTSITHKGLLGGGKSRNEDSFLHQLHDILKVILNFHDAIELLYN 737


>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 457 PEISNKTYHFYQIFNETMQCIEDNINPKENSTKVCEN 347
           PE  N   H   +F   +QC+E+N    ENST + E+
Sbjct: 97  PETKN---HIKSVFAPVIQCVEENDFEFENSTIIIED 130


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 144 GKHAIIPEQHKNIISGDFLNLQQ-FRLLLHIDLVAFI 251
           G++     + K  I  D +NL++ FRL+ HID VA+I
Sbjct: 225 GRYLASASKDKTAIIFDVVNLKRVFRLIGHIDTVAYI 261


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 130 IMVKYCGPIKDLPNILKQSRFKQRILRXSXWYQ 32
           I+ KY G  KD    + +S +KQ+      WYQ
Sbjct: 225 ILKKYDGRFKDTFQEVYESDYKQKFEELGLWYQ 257


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = -2

Query: 745 ICTKLLDEFADSASNFTKCSIKHARPIRLCEKCIDHYVKFRESYKNLLQTN 593
           + + L+DE A+ +    + S+  +R  RL E   D Y+K  E  ++L++T+
Sbjct: 116 VISSLIDEDANLSQIKARKSVLESRFSRLEEAFRDFYIKNLEKTEDLIRTD 166


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 646 IDHYVKFRESYKNLLQTNLNGTSCETIFISHDRLEVVLNYHDN-ILAIWNK 497
           I HY   RE+Y+  L+T   G S ET+ I H     +L +  N  ++IW +
Sbjct: 552 IMHYWVQRENYEKALETLNEGVSQETL-IQH--ATALLTHRPNETVSIWER 599


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -2

Query: 142  VLYYI-MVKYCGPIKDLPNILKQSRFKQRILRXSXWYQLGHQYFYVNQ 2
            +LY+  M    GP+  +PN+    +  Q  +R    Y +   +FYV Q
Sbjct: 1383 ILYWEPMYPVSGPVMFMPNVKWNPQLLQYTMRSMESYPVSVTFFYVPQ 1430


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 586 GTSCETIFISHDRLEVVLNYHDNILAIWNKGNCNDCFN 473
           G SC  +  S D   ++    DN L +W+  N N C N
Sbjct: 300 GISC--LSFSQDGNYLLSRGEDNALRVWDLRNSNKCVN 335


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 190 ETFSIYNSLGFCSILI*LHS 249
           ET  +YN L FCS  I LHS
Sbjct: 748 ETVDLYNLLSFCSAFI-LHS 766


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 19/69 (27%), Positives = 27/69 (39%)
 Frame = -2

Query: 724 EFADSASNFTKCSIKHARPIRLCEKCIDHYVKFRESYKNLLQTNLNGTSCETIFISHDRL 545
           EF  +A     C    +  +RL  K +    K  E  + LL TNL  +S    F     +
Sbjct: 102 EFERAAYTLQNCKSSKSIFLRLYSKYLAGEKKSEEENETLLNTNLTLSSTNREFYYISEV 161

Query: 544 EVVLNYHDN 518
              L+Y  N
Sbjct: 162 LESLHYQGN 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,017,944
Number of Sequences: 5004
Number of extensions: 65529
Number of successful extensions: 186
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)