Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16d07
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358...    30   1.7  
12_01_0054 + 463743-464414,464896-465024,465336-465440,465524-46...    28   9.2  

>02_04_0371 +
           22434710-22435102,22435428-22435624,22435707-22435824,
           22436458-22436574,22436702-22436803,22437431-22437487,
           22437976-22438044,22438423-22438533,22438597-22438791,
           22439023-22439121,22439656-22440222,22440344-22440568,
           22441036-22441338,22441640-22441707,22441947-22442105,
           22442230-22442475,22442549-22442680,22443243-22443351,
           22444131-22444283,22444359-22444601,22444695-22444862,
           22445013-22445156,22445238-22445699,22446495-22446791,
           22446867-22447024,22447139-22447246,22447474-22447732
          Length = 1752

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = -2

Query: 400 CIEDNINPKENSTKVC-ENCMQSYIQLNNYYESLSFDRIGLDIICMDVIDSMNATRSIWS 224
           C     +  ++S  +C EN + SYI  +   ES +   + LD   + VID    T     
Sbjct: 272 CFSQIWSSYDSSATICYENMVTSYIGESRMSESRNTQLVYLDAEFLAVIDGKAVTEKENC 331

Query: 223 KSLNCCKLRKSPEIIFLCCSGIIACL 146
            + +   +R SP+  FL C+ +  CL
Sbjct: 332 PTSDQSFVRFSPQ--FLFCANMDLCL 355


>12_01_0054 +
           463743-464414,464896-465024,465336-465440,465524-465917,
           466325-466422,466505-466753,466920-466979
          Length = 568

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/87 (21%), Positives = 36/87 (41%)
 Frame = -2

Query: 364 TKVCENCMQSYIQLNNYYESLSFDRIGLDIICMDVIDSMNATRSIWSKSLNCCKLRKSPE 185
           T + + C  + ++L N    L     G+D       D++ +     SKSL    +  S  
Sbjct: 223 TMIVKKCFPAIMKLQNLQVLLLVGCNGIDD------DALTSLDQECSKSLQVLDMSNSYN 276

Query: 184 IIFLCCSGIIACLPVLYYIMVKYCGPI 104
           +  +    I+  +P L  + + YC P+
Sbjct: 277 VTHVGVLSIVKAMPNLLELNLSYCSPV 303


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,960,523
Number of Sequences: 37544
Number of extensions: 333115
Number of successful extensions: 724
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)