Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16d07
(752 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47809-3|CAA87781.2| 322|Caenorhabditis elegans Hypothetical pr... 67 1e-11
AY714241-1|AAV68307.1| 529|Caenorhabditis elegans SPD-1 protein. 31 1.2
AC024756-3|AAT81176.1| 529|Caenorhabditis elegans Spindle defec... 31 1.2
Z81536-9|CAB04362.1| 733|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z92972-1|CAB07483.1| 283|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical p... 29 2.7
Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical p... 29 2.7
Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical p... 29 3.5
AF025452-9|AAB70946.1| 348|Caenorhabditis elegans Hypothetical ... 29 3.5
Z81493-10|CAB04044.2| 508|Caenorhabditis elegans Hypothetical p... 28 6.2
U49954-1|AAA93426.1| 388|Caenorhabditis elegans Hypothetical pr... 28 6.2
AF117337-1|AAD22029.1| 277|Caenorhabditis elegans Hus1-like pro... 28 6.2
AF106587-2|AAC78225.1| 277|Caenorhabditis elegans Human hus1 re... 28 6.2
AF039711-9|ABS19467.1| 281|Caenorhabditis elegans Temporarily a... 28 8.2
AC006677-10|AAF39946.1| 330|Caenorhabditis elegans Serpentine r... 28 8.2
>Z47809-3|CAA87781.2| 322|Caenorhabditis elegans Hypothetical
protein F42A8.3 protein.
Length = 322
Score = 67.3 bits (157), Expect = 1e-11
Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 22/226 (9%)
Frame = -2
Query: 742 CTKLLDEFADSASNFTKCSIKHARPIRLCEKCIDHYVKFRE---SYKNLLQT-NLNGTSC 575
C K +++ A S C+ + P +C KC +Y+ F++ KNL +L+ +C
Sbjct: 42 CQKYVEKLAVVQSEMVACATNWSIPPVVCTKCFQNYINFKQFEYETKNLNNVYSLDNRTC 101
Query: 574 ETIFISHDRLEVVLNYHDNILA-IWNKGNCNDC----FNWTKDKPEI--SNKTYHFYQIF 416
+ + L + + + IW K C+ C +N+ ++K E+ S +T F
Sbjct: 102 SQVIYDNYLLSYSTDISKALTSEIWEKSRCDSCITIKWNFPQNKSEVSFSERTMQFQNRM 161
Query: 415 NETMQCI---------EDNINPKENSTKVCENCMQSYIQLNNYYESLSFDRIGLDIICMD 263
E C+ +DN+ N +K+C C ++ +L YY + + +D C+D
Sbjct: 162 YEWRNCVVNYTSGGVLDDNLT---NGSKICNLCKTTFDELFGYYWKI-YTTPDVD-FCVD 216
Query: 262 VIDSMNATRSIWSKSLNCCKLRKSPEIIF--LCCSGIIACLPVLYY 131
V +MN T +W C + + +F + G + L L+Y
Sbjct: 217 VETTMNDTIHLWDDVWKCAEKQDRNRDLFGIMITFGTLLLLTALFY 262
>AY714241-1|AAV68307.1| 529|Caenorhabditis elegans SPD-1 protein.
Length = 529
Score = 30.7 bits (66), Expect = 1.2
Identities = 31/150 (20%), Positives = 63/150 (42%)
Frame = -2
Query: 637 YVKFRESYKNLLQTNLNGTSCETIFISHDRLEVVLNYHDNILAIWNKGNCNDCFNWTKDK 458
Y+ + KNLL+ N++ S E +F S L+ + +YH + ++ + F WT+
Sbjct: 200 YIGGDDDLKNLLEKNID--SPEFVF-SERLLDSLQSYHSELEPLYKHWLEDIEFRWTEKH 256
Query: 457 PEISNKTYHFYQIFNETMQCIEDNINPKENSTKVCENCMQSYIQLNNYYESLSFDRIGLD 278
++ + +E + P +NS + + +L YE+
Sbjct: 257 QQLQELWEKC--LVSEADRHYSPIFEPTKNSEQTLKRMEDECDRLEKKYEA--------- 305
Query: 277 IICMDVIDSMNATRSIWSKSLNCCKLRKSP 188
C V + ++ R++W++ L + RK P
Sbjct: 306 --CRIVFELVDKWRAVWTEKLTIDEKRKQP 333
>AC024756-3|AAT81176.1| 529|Caenorhabditis elegans Spindle
defective protein 1 protein.
Length = 529
Score = 30.7 bits (66), Expect = 1.2
Identities = 31/150 (20%), Positives = 63/150 (42%)
Frame = -2
Query: 637 YVKFRESYKNLLQTNLNGTSCETIFISHDRLEVVLNYHDNILAIWNKGNCNDCFNWTKDK 458
Y+ + KNLL+ N++ S E +F S L+ + +YH + ++ + F WT+
Sbjct: 200 YIGGDDDLKNLLEKNID--SPEFVF-SERLLDSLQSYHSELEPLYKHWLEDIEFRWTEKH 256
Query: 457 PEISNKTYHFYQIFNETMQCIEDNINPKENSTKVCENCMQSYIQLNNYYESLSFDRIGLD 278
++ + +E + P +NS + + +L YE+
Sbjct: 257 QQLQELWEKC--LVSEADRHYSPIFEPTKNSEQTLKRMEDECDRLEKKYEA--------- 305
Query: 277 IICMDVIDSMNATRSIWSKSLNCCKLRKSP 188
C V + ++ R++W++ L + RK P
Sbjct: 306 --CRIVFELVDKWRAVWTEKLTIDEKRKQP 333
>Z81536-9|CAB04362.1| 733|Caenorhabditis elegans Hypothetical
protein F40D4.12 protein.
Length = 733
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = -2
Query: 667 IRLCEKCIDHYVKFRESYKNLLQTNLNGTSCETIFISHD----RLEVVLNYH-DNILAIW 503
IR CE C + K R ++ LLQ CE+ I + R++V + Y DN+ +I
Sbjct: 481 IRHCELCQETENKHRNEFRKLLQKYRWNFECESDLIKQESYVQRVDVFIKYFGDNLKSIG 540
Query: 502 NK 497
+K
Sbjct: 541 HK 542
>Z92972-1|CAB07483.1| 283|Caenorhabditis elegans Hypothetical
protein T19C9.1 protein.
Length = 283
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 160 IIACLPVLYYIMVKYCGPIKDLP 92
++ACL V YI+ YCG + D+P
Sbjct: 132 LLACLLVHQYILFGYCGVVVDVP 154
>Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -2
Query: 685 IKHARPIRLCEKCIDHYVKFRESYKNLLQ 599
I++ + + +CEKC + ++KF E K + +
Sbjct: 1106 IENGQIVDMCEKCFEQHIKFTEEQKYMFE 1134
>Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -2
Query: 685 IKHARPIRLCEKCIDHYVKFRESYKNLLQ 599
I++ + + +CEKC + ++KF E K + +
Sbjct: 1106 IENGQIVDMCEKCFEQHIKFTEEQKYMFE 1134
>Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical
protein C30H6.4 protein.
Length = 476
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 523 DNILAIWNKGNCNDCFNWTKDKPE 452
DN+ IW G+ DC W D P+
Sbjct: 167 DNVTYIWTDGSPTDCLWWQPDYPK 190
>AF025452-9|AAB70946.1| 348|Caenorhabditis elegans Hypothetical
protein B0454.9 protein.
Length = 348
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -2
Query: 544 EVVLNYHDNILAIWNKGNCNDCFNWTKDKPEISNKTY 434
+VVLN + I AIW NC + +N K PE++ + Y
Sbjct: 58 KVVLNEIEKIPAIW---NCKNTYNANKLYPEVAVQVY 91
>Z81493-10|CAB04044.2| 508|Caenorhabditis elegans Hypothetical
protein F01D5.9 protein.
Length = 508
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = -2
Query: 742 CTKLLDEFADSASNFTKCSIKHARPIRLCEKCIDHYVKFRESYKNLLQT 596
C + LDE + S +CS++ + ++ EKC+ ++ R S + ++
Sbjct: 341 CHEELDEIFEGTSR--ECSVEDLKKMKYLEKCVKEALRMRPSVPQMARS 387
>U49954-1|AAA93426.1| 388|Caenorhabditis elegans Hypothetical
protein Y102E9.2 protein.
Length = 388
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/68 (23%), Positives = 31/68 (45%)
Frame = -2
Query: 574 ETIFISHDRLEVVLNYHDNILAIWNKGNCNDCFNWTKDKPEISNKTYHFYQIFNETMQCI 395
++ F+ H L DN ++W+ G + +NW+ K +T Q F+ ++ I
Sbjct: 191 DSFFLGHTEYVKTLAVQDND-SLWSSGGDKNLYNWSIAKCSAPRRTLDLSQ-FDAPIRKI 248
Query: 394 EDNINPKE 371
N+ K+
Sbjct: 249 SINLQHKK 256
>AF117337-1|AAD22029.1| 277|Caenorhabditis elegans Hus1-like
protein protein.
Length = 277
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -2
Query: 304 LSFDRIGLDIICMDVIDSMNATRSIWSKSLNCCKLRKSPEIIFLCCSGI 158
+ F + D +DV + + S SK C K+ K+ + F+CCSG+
Sbjct: 1 MKFSSLLQDTAAIDVFIKILTSVSKLSKKRCCVKIEKNA-LNFICCSGL 48
>AF106587-2|AAC78225.1| 277|Caenorhabditis elegans Human hus1
related protein 1 protein.
Length = 277
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -2
Query: 304 LSFDRIGLDIICMDVIDSMNATRSIWSKSLNCCKLRKSPEIIFLCCSGI 158
+ F + D +DV + + S SK C K+ K+ + F+CCSG+
Sbjct: 1 MKFSSLLQDTAAIDVFIKILTSVSKLSKKRCCVKIEKNA-LNFICCSGL 48
>AF039711-9|ABS19467.1| 281|Caenorhabditis elegans Temporarily
assigned gene nameprotein 296 protein.
Length = 281
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -3
Query: 486 MIVLTGLKINQKFQIKLTIFIKFLMKQCNVL 394
M++ L +NQ+F+IK T FI LMK +L
Sbjct: 1 MLLNHALTMNQQFKIKTTAFIIHLMKVYRLL 31
>AC006677-10|AAF39946.1| 330|Caenorhabditis elegans Serpentine
receptor, class j protein18 protein.
Length = 330
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/52 (23%), Positives = 27/52 (51%)
Frame = +2
Query: 344 TVLTHFCTILFGIYIVFNTLHCFIKNLIKMVSFI*NFWFIFSPVKTIITISF 499
T+++ C + G Y + N F N++K SF+ +++ + + +I + F
Sbjct: 90 TLISLRCAFIAGTYGILNIHFIFRYNVLKNTSFVSHYFMPYGLILSIFLVIF 141
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,329,695
Number of Sequences: 27780
Number of extensions: 359933
Number of successful extensions: 1053
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -