Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16d07
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               25   1.0  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.3  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   2.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.3  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   2.3  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   3.1  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              21   9.4  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -2

Query: 736 KLLDEFADSASNFTKCSIKHARPIRLCEKCIDHYVKFRESYKNLLQTNLNGTSCE 572
           K++ +  D+A N  KC            +C+  YVKF  +   +   N N TS E
Sbjct: 96  KIIRQCVDNAKNEDKCLTAQK-----FSRCVIDYVKFHITQYMISNANSNTTSEE 145


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -2

Query: 646 IDHYVKFRESYKNLLQTNLN--GTSCETIFISHDRLEVVLNYHDNILAIWNKG 494
           +D+Y K++E+        LN  G S E++ +  D+L   + Y D+  ++ N G
Sbjct: 425 LDYYHKYKENLPKYTTEELNFPGVSIESVTV--DKL---ITYFDHFESMLNNG 472


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 520 NILAIWNKGNCNDCFNWTKDK 458
           NI     KG CND F +  D+
Sbjct: 192 NIAVDLGKGGCNDAFAYMSDE 212


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -2

Query: 646 IDHYVKFRESYKNLLQTNLN--GTSCETIFISHDRLEVVLNYHDNILAIWNKG 494
           +D+Y K++E+        LN  G S E++ +  D+L   + Y D+  ++ N G
Sbjct: 425 LDYYHKYKENLPKYTTEELNFPGVSIESVTV--DKL---ITYFDHFESMLNNG 472


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -2

Query: 646 IDHYVKFRESYKNLLQTNLN--GTSCETIFISHDRLEVVLNYHDNILAIWNKG 494
           +D+Y K++E+        LN  G S E++ +  D+L   + Y D+  ++ N G
Sbjct: 51  LDYYHKYKENLPKYTTEELNFPGVSIESVTV--DKL---ITYFDHFESMLNNG 98


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 651 FSHSLIGLACLIEHFVKLDAESANSSSNFVQI 746
           F  +L+GL C+I+  +KL  +   ++   V I
Sbjct: 112 FDINLLGLTCMIQEVLKLMKKKGINNGIIVNI 143


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 493 NCNDCFNWTKDKPEISNKTYHFY 425
           NC   + + K   E+S +TY+ +
Sbjct: 123 NCEYAYRFNKCYAELSPRTYYLF 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,197
Number of Sequences: 438
Number of extensions: 4532
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)