Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16d03
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 100 3e-22
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 58 2e-20
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 87 4e-18
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 66 4e-12
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 49 7e-07
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 48 1e-06
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 46 6e-06
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 45 1e-05
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 29 0.78
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 27 2.4
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 27 2.4
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 27 3.1
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 27 4.1
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 26 5.5
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 26 7.2
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 100 bits (239), Expect = 3e-22
Identities = 58/135 (42%), Positives = 80/135 (59%)
Frame = +3
Query: 63 KVTEGGSNFSVGQRQLMCLARAILRSNKILIMDEATANVDPQ*VLYQLTRQLLIGYRVYL 242
+VTEGG+N S GQRQLMCL RA+L ++L++DEATA VD +
Sbjct: 1353 RVTEGGANLSSGQRQLMCLTRALLTPTRVLLLDEATAAVDVE------------------ 1394
Query: 243 *NLSSIFRTDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAEFDHPYILM 422
TD +Q+TIR F T+LTIAHR+NT+MDS+R+LV+ G+V EFD L+
Sbjct: 1395 --------TDAIVQRTIRERFNDRTILTIAHRINTVMDSNRILVLDHGKVVEFDSTKKLL 1446
Query: 423 SDPNSHLSSMVRETG 467
+ S S+ +E+G
Sbjct: 1447 ENKASLFYSLAKESG 1461
Score = 31.1 bits (67), Expect = 0.19
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +3
Query: 63 KVTEGGSNFSVGQRQLMCLARAILRSNKILIMDEATANVDPQ*VLYQLTRQLL 221
+V E G + S GQ+ + LARA+ + I ++D+ + VD Q V L R LL
Sbjct: 698 EVGEKGISLSGGQKARISLARAVYSRSDIYLLDDILSAVD-QHVNRDLVRNLL 749
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 57.6 bits (133), Expect(2) = 2e-20
Identities = 28/51 (54%), Positives = 37/51 (72%)
Frame = +3
Query: 30 DMKAAVPSLDFKVTEGGSNFSVGQRQLMCLARAILRSNKILIMDEATANVD 182
D K +LD V GSNFS GQ+Q++ LARAI+R +KI+I+DE TA+VD
Sbjct: 1337 DQKPIHITLDTHVASEGSNFSQGQKQVLALARAIVRRSKIIILDECTASVD 1387
Score = 56.8 bits (131), Expect(2) = 2e-20
Identities = 28/66 (42%), Positives = 40/66 (60%)
Frame = +3
Query: 270 DNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAEFDHPYILMSDPNSHLSS 449
D IQ+T+R AF T+L IAHRL TI+D D+V+V+ G + E+ P +L + N H
Sbjct: 1391 DQKIQKTLREAFGDATMLCIAHRLKTIVDYDKVMVLDKGVLVEYGPPAVLYHN-NGHFRR 1449
Query: 450 MVRETG 467
M +G
Sbjct: 1450 MCDGSG 1455
Score = 33.5 bits (73), Expect = 0.036
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +3
Query: 30 DMKAAVPSLDFKVTEGGSNFSVGQRQLMCLARAILRSNKILIMDEATANVD 182
D+++ V S ++ E G S GQ+Q + LARA+ I++MD+ + +D
Sbjct: 721 DLQSFVASDLTEIGEKGVTLSGGQKQRIALARAVYSPTSIVLMDDVFSALD 771
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 86.6 bits (205), Expect = 4e-18
Identities = 56/135 (41%), Positives = 75/135 (55%)
Frame = +3
Query: 63 KVTEGGSNFSVGQRQLMCLARAILRSNKILIMDEATANVDPQ*VLYQLTRQLLIGYRVYL 242
+V EGG+NFS GQRQL+CLAR VL TR LL+
Sbjct: 1355 RVAEGGANFSSGQRQLICLAR----------------------VLLTSTRILLLDEAT-- 1390
Query: 243 *NLSSIFRTDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAEFDHPYILM 422
S TD +QQTIR+ F T+LT+AHR+NT+MDSDR+LV+ G+V EFD L+
Sbjct: 1391 --ASVHAETDAIVQQTIRKRFKDRTILTVAHRINTVMDSDRILVLDHGKVVEFDATKKLL 1448
Query: 423 SDPNSHLSSMVRETG 467
+ +S S+ +E+G
Sbjct: 1449 ENKDSMFYSLAKESG 1463
Score = 39.9 bits (89), Expect = 4e-04
Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 1/145 (0%)
Frame = +3
Query: 63 KVTEGGSNFSVGQRQLMCLARAILRSNKILIMDEATANVDPQ*VLYQLTRQLLIGYRVYL 242
+V + G++ S GQ+ + LARAI I ++D+ ++VD ++R L
Sbjct: 696 EVGQKGASLSGGQKSRISLARAIYSQADIYLLDDVLSSVD-----QHVSRDL-------- 742
Query: 243 *NLSSIFRTDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAEFDHPYILM 422
+ ++F + F++ C VLT + LN + ++D + ++S G++ E + L
Sbjct: 743 --IKNLFGPEGFLR-------THCVVLT-TNSLNVLKEADSIYILSNGKIVEKGNYEHLF 792
Query: 423 SDPNSHLSSMVRE-TGEKNSLKLFE 494
NS L + E EK++ L E
Sbjct: 793 VSTNSELKQQLSEFNDEKDTQPLPE 817
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 66.5 bits (155), Expect = 4e-12
Identities = 43/119 (36%), Positives = 64/119 (53%)
Frame = +3
Query: 54 LDFKVTEGGSNFSVGQRQLMCLARAILRSNKILIMDEATANVDPQ*VLYQLTRQLLIGYR 233
LD V GG NFS GQRQ++ LARA++R ++I+I+DE+TA+VD
Sbjct: 1314 LDTPVDSGGVNFSSGQRQILALARALVRKSRIVILDESTASVDD---------------- 1357
Query: 234 VYL*NLSSIFRTDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAEFDHP 410
++ R ++ + A C IAHR+ TI+D D+VLV+ +G+ EF P
Sbjct: 1358 ------TTDRRIQQMLRAAFKHATVLC----IAHRIKTIVDYDKVLVLDSGKTVEFGSP 1406
Score = 29.5 bits (63), Expect = 0.59
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 66 VTEGGSNFSVGQRQLMCLARAILRSNKILIMDEATANVD 182
+ GS+ S GQ+Q + LARA+ + ++ I D+ + +D
Sbjct: 700 IHSNGSSLSGGQKQRVSLARALYSNAEVYIFDDIFSALD 738
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 49.2 bits (112), Expect = 7e-07
Identities = 33/107 (30%), Positives = 55/107 (51%)
Frame = +3
Query: 78 GSNFSVGQRQLMCLARAILRSNKILIMDEATANVDPQ*VLYQLTRQLLIGYRVYL*NLSS 257
GS+ S GQ+Q + +ARA++R+ KIL++DEAT+ +D
Sbjct: 1256 GSSLSGGQKQRIAIARALIRNPKILLLDEATSALDS------------------------ 1291
Query: 258 IFRTDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAE 398
++ +Q+ + A T + IAHRL++I D+D + V G +AE
Sbjct: 1292 --HSEKVVQEALNAASQGRTTVAIAHRLSSIQDADCIFVFDGGVIAE 1336
Score = 46.8 bits (106), Expect = 4e-06
Identities = 32/111 (28%), Positives = 58/111 (52%)
Frame = +3
Query: 66 VTEGGSNFSVGQRQLMCLARAILRSNKILIMDEATANVDPQ*VLYQLTRQLLIGYRVYL* 245
V + G S GQ+Q + +ARA++ KIL++DEAT+ +D
Sbjct: 561 VGQRGFLMSGGQKQRIAIARAVISDPKILLLDEATSALDS-------------------- 600
Query: 246 NLSSIFRTDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAE 398
+++ +Q+ + A S T + IAHRL+TI ++D ++V++ G++ E
Sbjct: 601 ------KSEVLVQKALDNASRSRTTIVIAHRLSTIRNADNIVVVNAGKIVE 645
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 48.4 bits (110), Expect = 1e-06
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 1/140 (0%)
Frame = +3
Query: 63 KVTEGGSNFSVGQRQLMCLARAILRSNKILIMDEATANVDPQ*VLYQLTRQLLIGYRVYL 242
+V E G S G++Q + +ARAIL+ I+++DEAT+ +D
Sbjct: 713 RVGERGLKLSGGEKQRVAVARAILKDPSIILLDEATSALDT------------------- 753
Query: 243 *NLSSIFRTDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAEF-DHPYIL 419
T+ IQ + R + T + IAHRL+TI ++D +L +S G + E H ++
Sbjct: 754 -------NTERQIQAALNRLASGRTAIVIAHRLSTITNADLILCISNGRIVETGTHEELI 806
Query: 420 MSDPNSHLSSMVRETGEKNS 479
D ++ ++ K S
Sbjct: 807 KRDGGAYKKMWFQQAMGKTS 826
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 46.0 bits (104), Expect = 6e-06
Identities = 38/115 (33%), Positives = 60/115 (52%)
Frame = +3
Query: 54 LDFKVTEGGSNFSVGQRQLMCLARAILRSNKILIMDEATANVDPQ*VLYQLTRQLLIGYR 233
LD + E NFS GQ Q + ARA+LR+ ++LI+DE T+ +D +
Sbjct: 1225 LDTPLLEFSKNFSGGQIQRLAFARALLRNPRLLILDECTSALDSK--------------- 1269
Query: 234 VYL*NLSSIFRTDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAE 398
SS+ +++TI+ SCTVL I H+ + + +DR++VM +G V E
Sbjct: 1270 ------SSL-----LLEKTIQN--LSCTVLIITHQPSLMKLADRIIVMDSGIVKE 1311
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/35 (51%), Positives = 27/35 (77%)
Frame = +3
Query: 81 SNFSVGQRQLMCLARAILRSNKILIMDEATANVDP 185
++ S GQ+Q + LARA+LR +ILI+DE T+ +DP
Sbjct: 569 ASLSGGQQQRIALARALLRDTEILILDEPTSALDP 603
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 45.2 bits (102), Expect = 1e-05
Identities = 37/127 (29%), Positives = 65/127 (51%)
Frame = +3
Query: 78 GSNFSVGQRQLMCLARAILRSNKILIMDEATANVDPQ*VLYQLTRQLLIGYRVYL*NLSS 257
G S GQ+Q + +ARA+LR+ LI+DEAT+ +D + ++++
Sbjct: 617 GLQLSGGQKQRIAIARALLRNPAFLILDEATSALDGE-------AEVMV----------- 658
Query: 258 IFRTDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAEFDHPYILMSDPNS 437
D IQ + S T +TIAH+L TI +D+++V+ G+V E + +S P +
Sbjct: 659 ----DKTIQSLMHN--RSMTTITIAHKLATIRRADQIIVVGDGKVLE-QGSFERLSRPGT 711
Query: 438 HLSSMVR 458
+ ++R
Sbjct: 712 NFYKLMR 718
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 29.1 bits (62), Expect = 0.78
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 81 SNFSVGQRQLMCLARAILRSNKILIMDEATANVD 182
S+ SVG ++ + RAI++ +++++DE VD
Sbjct: 404 SSISVGMQRFILFCRAIVKQPRLVVLDEPFQGVD 437
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 27.5 bits (58), Expect = 2.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -1
Query: 143 IGSEYGSCQAHQLSLAHGEVRSTFCHFEI 57
+G Y C H+ + HGE+R H+++
Sbjct: 129 LGVSYVLCFLHEKKIVHGEIRLDTFHYDL 157
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +3
Query: 81 SNFSVGQRQLMCLARAILRSNKILIMDEATANVD 182
++ S G + + LARA+L+ IL++DE T ++D
Sbjct: 561 ASLSGGWKMKLELARAMLQKADILLLDEPTNHLD 594
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 90 SVGQRQLMCLARAILRSNKILIMDEATANVD 182
S G+R+ + L +LR ++L++DE T ++D
Sbjct: 130 SDGERRRVQLCMGLLRPFEVLLLDEVTVDLD 160
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 576 SLTYPSLCIGVSNVSVFDYFGNTHLWQLQITL 481
S++ PS+C ++ DY TH+ Q+ I+L
Sbjct: 609 SISTPSVCTSLTFAPTGDYLATTHVDQVGISL 640
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 635 VANFRNSSATTHFKFGYLAKRNN 703
V +N S T+ FK G+L K+NN
Sbjct: 213 VQQIKNGSKTSLFKKGFLFKKNN 235
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -2
Query: 199 YKTH*GSTLAVASSIIKILLDLSMARAKHISCLWPTEKLDPPSV 68
Y+ H L + +DL M ++I+CL+ K+D S+
Sbjct: 209 YRIHNADILIREDITVDDFIDLVMGNRRYINCLYCYSKIDAVSL 252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,395,580
Number of Sequences: 5004
Number of extensions: 72180
Number of successful extensions: 183
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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