Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16d02
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    30   0.49 
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    27   2.6  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    27   2.6  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   3.4  
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    27   4.5  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    27   4.5  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    26   6.0  
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    26   6.0  
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    26   7.9  

>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 21/97 (21%), Positives = 38/97 (39%)
 Frame = -3

Query: 566 DVFTIQVNPLKDLTEIAPNEDPYVDCDPLVFKIIKKRSPEEQAKVEARKMVKLKKQRDAE 387
           + F   V  L D+ EI  +   Y+   P       K+   E   +   ++ K+ K    +
Sbjct: 598 EFFRFSVGGLTDVAEIKGHRRTYIGAMPGKIVQALKKVQTENPLILIDEIDKVGKSHQGD 657

Query: 386 IRKALAEAVEDICKCAYMDVYCNDLTAIDKVIDSCPA 276
              AL E ++     A++D Y +    +  V+  C A
Sbjct: 658 PASALLELLDSEQNSAFLDYYMDIPLDVSSVLFVCTA 694


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 542 PLKDLTEIAPNEDPYVDCDPLVF 474
           PLK++T + P +DP +  + LV+
Sbjct: 314 PLKNITSLLPKQDPLISTEILVY 336


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -3

Query: 500 YVDCDPLVFKII---KKRSPEEQAKVEARKMVKLKKQRDAEIRKALAEAVEDICKCAYMD 330
           Y D    ++K I   K R P     VEAR ++KL   R+ + R      VE++ K  + D
Sbjct: 469 YADNTQQLYKNIVFGKVRFPRGLLSVEARDLIKLLLNRNPKHRLGAHGDVEEVMKHPFFD 528


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
 Frame = -3

Query: 623 SEPD-EPLEPK--PALKVQRKGDVFTIQVNPLKDLTEIAPNEDPYVDCDPLVFKIIKKRS 453
           SE D E LE +   A +++ + + + I +   + ++     E    + DP+V ++ ++ +
Sbjct: 651 SETDIEALERRLSKAYRMEAQEEAYAINIGGGRVISPEELEEIARRNVDPMVSELSERAA 710

Query: 452 PEEQAKVEARKMVKLKKQRDAEIR 381
            E + K +A++  +LKK    E R
Sbjct: 711 QERERKEQAKEAKRLKKLAKEEKR 734


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 536 KDLTEIAPNEDPYVDCDPLVFKIIKKRSPEEQAKV 432
           K LT I   + P  +CDP V+KI++     ++  +
Sbjct: 6   KVLTIIKLLKAPLAECDPTVYKILESEKSRQKESI 40


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 243 FLVAYTLWFFKGWTTVYNLIDGS*IITIDIHIGTFANVF 359
           FLV   L    G+  V+ + D + +I  + H G FA+ +
Sbjct: 58  FLVPLLLTVIAGFVRVWKIADSNVVIWDEAHFGKFASYY 96


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 779 LQECLPHSTATPFWLAPVNL 838
           L   L     TP+WLAP+NL
Sbjct: 742 LSTSLEQQIPTPYWLAPLNL 761


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 626 DSEPDEPLEPKPALKVQRKGDVFTIQVNPLKDLTEIAPNED 504
           D E D  +E + AL++QRK      + + + D+++ A N D
Sbjct: 136 DDEFDARMEEQEALRLQRKRLEKVSETDAIDDISQWADNSD 176


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 257 ICHEESLSSLSSNATWDIEYTPP 189
           +C+EES   L   + WDI    P
Sbjct: 155 VCYEESKKYLQKQSNWDISVIAP 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,355,780
Number of Sequences: 5004
Number of extensions: 66241
Number of successful extensions: 232
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)