Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16d01
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    25   3.5  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    25   6.1  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    24   8.1  

>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 410 KNPLVIKNTYYYDEVTIFYK 351
           ++PL +KN  YY+EV  F K
Sbjct: 554 QSPLTMKNVPYYEEVIDFVK 573


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = -2

Query: 70  PRSLISYLCRLSLRHARATR*NV 2
           P+  IS+LC++ ++H+R ++ N+
Sbjct: 137 PKDEISFLCQVPVKHSRDSQKNM 159


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 310 FVCPFCSVFFYNLIL*NIVTS 372
           +VCPFC+  F +L + ++VT+
Sbjct: 136 YVCPFCNKKFSSLDVLSLVTN 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,467,730
Number of Sequences: 5004
Number of extensions: 26191
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)