Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16d01
         (413 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.3  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    20   9.6  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          20   9.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 188 SNRQLDHKHFVCPLVRFHTINLTEHTI 268
           SN Q    + +C L    T+NLTE+ +
Sbjct: 157 SNVQALPVNSLCSLDNLQTLNLTENRL 183


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 47  EVANE*ARRIPRVRTSRTFHTSVPGIGLKATE 142
           ++  E  ++IP +RT  T H S   +  K TE
Sbjct: 383 DILRELLKKIPDLRTLNTLH-SEKLLAFKMTE 413


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 115 SRYRFKGDRECSSHYR 162
           SRY  +  +E  SHYR
Sbjct: 121 SRYPLRPPQEVISHYR 136


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 112 GSRYRFKGDRECS 150
           G+ YR  G+R CS
Sbjct: 242 GNSYRNDGERSCS 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,390
Number of Sequences: 438
Number of extensions: 1775
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)