Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16c23
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0206 - 2206359-2209142                                           29   4.6  
03_06_0045 - 31259107-31259385,31259509-31259745,31260427-312604...    28   8.0  

>10_01_0206 - 2206359-2209142
          Length = 927

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 389 YFFSIKFARCTQSQTSQRKYHPPPLSL 469
           + + I  A C +S+    K  PPPLSL
Sbjct: 735 FLYHIHIAACDESEVQLNKLDPPPLSL 761


>03_06_0045 -
           31259107-31259385,31259509-31259745,31260427-31260477,
           31260541-31260908,31260992-31261250
          Length = 397

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 8/27 (29%), Positives = 20/27 (74%)
 Frame = -3

Query: 518 DLIILVSI*NLSVSTSLMTRAVGDIYV 438
           DL++ +++  L +  S+++R +GD+Y+
Sbjct: 210 DLVVKIAVCGLDLQLSVVSRTIGDVYL 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,926,239
Number of Sequences: 37544
Number of extensions: 173878
Number of successful extensions: 215
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)