Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16c22
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   0.86 
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    27   0.86 
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   6.1  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   6.1  
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce...    25   6.1  
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    24   8.0  
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    24   8.0  

>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 27.5 bits (58), Expect = 0.86
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 230 YFNILIIFQNVCAYCSNLFDIY 165
           YF+I I F +VC++ SN F ++
Sbjct: 522 YFSIFITFLHVCSFGSNSFTVW 543


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 27.5 bits (58), Expect = 0.86
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 234 SIFQYFNYISKCVRILF*FI*YLLSPIKL 148
           S+ QYF   SK  R +F    YL+ PI+L
Sbjct: 106 SVVQYFQIFSKDPRAIFLSALYLIDPIRL 134


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 193 HIVLIYLIFTQSYQTKQLSECKLSAN 116
           ++  +YLI+ +  +TK LSE K   N
Sbjct: 589 YLASVYLIYLKQMETKNLSEEKPQVN 614


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 9   NKKFIHTTMALFKTMLYCISVKFILQWLMVIQHI 110
           N+ FI +  A+ +  L  IS+K ++ WLM  + I
Sbjct: 438 NRDFITSFSAVAEVSLSQISIKKLVTWLMSSESI 471


>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -2

Query: 321 ILFAKV*K*QKAVNQFIDKNKKVHTESNKSIFQYFNYISKCV 196
           +L  K+ K +K V++F + +K    +    +FQ    + KC+
Sbjct: 42  LLVEKIEKWEKKVSKFTENSKSEKRKLQLELFQEIIDLKKCI 83


>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -3

Query: 275 LLTKIKKYIQNQTNPYFNILII 210
           +L+ IK YIQ+  +P+F+++ I
Sbjct: 198 VLSVIKNYIQSIDSPFFSLVAI 219


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 11  QKIYSYYNGAIQNYALLY 64
           QK+ S+ N A+QN+ L Y
Sbjct: 83  QKVDSFCNNALQNFKLCY 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,591,299
Number of Sequences: 5004
Number of extensions: 30839
Number of successful extensions: 74
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)