Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16c22
         (412 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41011-5|AAA82288.2|  320|Caenorhabditis elegans Fatty acid elon...    29   1.7  
Z75549-2|CAA99916.1|  313|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U51993-1|AAB36851.2|  377|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AF039040-2|AAO91670.1|  615|Caenorhabditis elegans Hypothetical ...    27   5.3  
AF025451-10|AAB71207.1|  343|Caenorhabditis elegans Hypothetical...    27   7.0  
Z81050-4|CAB02854.1|  329|Caenorhabditis elegans Hypothetical pr...    26   9.2  

>U41011-5|AAA82288.2|  320|Caenorhabditis elegans Fatty acid
           elongation protein 3 protein.
          Length = 320

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 65  FS*IHSSVADGNTAYWCVCTKFALTQLFSLI 157
           +S  HSS A G T +W    +FA+++LF LI
Sbjct: 106 YSICHSSYAQGVTGFW--TEQFAMSKLFELI 134


>Z75549-2|CAA99916.1|  313|Caenorhabditis elegans Hypothetical
           protein T19C4.2 protein.
          Length = 313

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 239 TNPYFNILIIFQNVCAYCSNLFDIYS 162
           TN  F  LI FQ VC  CS + +I S
Sbjct: 167 TNLLFTPLIYFQGVCTLCSLICNIKS 192


>Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical
           protein F56D5.9 protein.
          Length = 1132

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 254 YIQNQTNPYFNILIIFQNVCAYCSNLFDIYSVLSN 150
           +IQN    YF +LIIF ++  +   L  +YS+  N
Sbjct: 722 WIQNSIPWYFIVLIIFGSLVLFIILLIILYSITPN 756


>U51993-1|AAB36851.2|  377|Caenorhabditis elegans Hypothetical
           protein F56F10.2 protein.
          Length = 377

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 259 FIFVNKLVYRFLLFLHFCKKYM 324
           F+FVNKL       LH+C  Y+
Sbjct: 55  FLFVNKLFELLTTILHYCMPYL 76


>AF039040-2|AAO91670.1|  615|Caenorhabditis elegans Hypothetical
           protein T22B11.4b protein.
          Length = 615

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -3

Query: 329 HAIYFLQKCKNNKKR*TNLLTKIKKYIQNQTNPYFNILIIFQNVCAYCSNLFDIYSVLS 153
           +A+Y  +K    K     ++ K+KK I+NQ   Y  I     N+    +NLF I S ++
Sbjct: 524 NAVYLTRKFFGKKLAENYIIDKLKKKIKNQHFSYPKINCSNLNLQILLNNLFFISSQIA 582


>AF025451-10|AAB71207.1|  343|Caenorhabditis elegans Hypothetical
           protein C24H12.11 protein.
          Length = 343

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 223 LKYGFV*FCMYFFIFVNKLVY 285
           LKYGF+  C+Y   F NKL++
Sbjct: 223 LKYGFLTRCLYKMEFNNKLLF 243


>Z81050-4|CAB02854.1|  329|Caenorhabditis elegans Hypothetical
           protein C50B6.5 protein.
          Length = 329

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 217 KILKYGFV*FCMYFFIFVNKLVYRFLLFLHF 309
           K   Y F   C Y ++ +N  +YR  L L F
Sbjct: 117 KASTYNFQSTCFYVYLQINLYIYRITLVLFF 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,575,093
Number of Sequences: 27780
Number of extensions: 163997
Number of successful extensions: 457
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)