Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16c22
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    22   2.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   3.1  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    21   4.1  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   7.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   7.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.2  

>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 251 CTFLFLSINWFTAFCYFYTFAKSI 322
           CTF FLS+   T+  YF T   SI
Sbjct: 7   CTFFFLSVILITS--YFVTPTMSI 28


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 282 NQFIDKNKKVHTESNKSIFQYFNYISK 202
           N+ I  N   +  +NK ++   NYI +
Sbjct: 309 NKTIHNNNNYNNYNNKKLYYNINYIEQ 335


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
          protein.
          Length = 85

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 47 NYALLYFS*IHSSVADG 97
          +YAL+ F+ +H S A+G
Sbjct: 29 SYALILFNILHMSSAEG 45


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 20  YSYYNGAIQNYALLYFS 70
           Y+Y N    NY  LY++
Sbjct: 104 YNYNNNNYNNYKKLYYN 120


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 96  VIQHIGAFALSLHSL 140
           V+  + AFAL+LH+L
Sbjct: 333 VVDAVYAFALALHNL 347


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 86  VADGNTAYWCVCTKFALTQLFSLIGLSKY 172
           VAD    Y+ +C      QLF+  G+  Y
Sbjct: 447 VADVVGDYFFICPSIHFAQLFADRGMKVY 475


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 86  VADGNTAYWCVCTKFALTQLFSLIGLSKY 172
           VAD    Y+ +C      QLF+  G+  Y
Sbjct: 447 VADVVGDYFFICPSIHFAQLFADRGMKVY 475


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 96  VIQHIGAFALSLHSL 140
           V+  + AFAL+LH+L
Sbjct: 423 VVDAVYAFALALHNL 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,829
Number of Sequences: 438
Number of extensions: 2078
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)