Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16c20
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    28   1.3  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   2.3  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    27   4.0  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    26   5.3  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    26   7.0  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   9.3  
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo...    25   9.3  
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...    25   9.3  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   9.3  
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...    25   9.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   9.3  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    25   9.3  

>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 358 VRIPLIDLCFHVNSRNCKPIKSADSFKSVLIRSLMEENQNNVRLGN 495
           V  P+IDLC H +  N K   S D+ +  L + + E  +  +  G+
Sbjct: 188 VLAPVIDLCNHSSKSNAKWSFSEDAMQLYLDKDIDENEEVTINYGS 233


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = -2

Query: 587  WEHYFNDTNSENYLIEF--TRSSLDRLRYVNGRLPNLTLF--WFSSISDRIKTDLKESAD 420
            WE +    N  NYL +F  T + +  ++   G    +T    +   + D IK DL +S  
Sbjct: 1124 WEKFLTSNNYSNYLADFETTHAQIMEMKPWVGDTSLITQLKRFLMCLQDNIKLDLIKSKS 1183

Query: 419  FI 414
            F+
Sbjct: 1184 FL 1185


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = -2

Query: 596 LECWEHYFNDTNSENYLIEFTRSSLDRLRYVNGRLPNLTLFWFSSISDRIKTDLKESADF 417
           L C++ ++   +     + F   ++D LRYV   LPNL L W+    +   ++   + D 
Sbjct: 141 LSCFQEFYK--HRIPCTLVFQDFNVDVLRYVT--LPNLLLNWYFCTQEHDSSEKHGTIDV 196

Query: 416 IGLQLREFT 390
               L+EF+
Sbjct: 197 SPSLLQEFS 205


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +2

Query: 38  LLDPAQPTES--DANLTSHVPDGSRLRHGLSIVFLLKQPP*ATPWHRDHHHL 187
           ++ P Q  E   D    + V   +   HG+   +LL  P  A  W + H+H+
Sbjct: 50  IISPDQIAEKIEDCGFDASVISSTEGEHGVMANYLLLSPMQAEQWTKVHNHI 101


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 65  SDANLTSHVPDGSRLRHGLSIVFLLKQ-PP*ATPWHRDHHHLK 190
           +D   +S  PD  RL H LS V L+   PP      +D+H  K
Sbjct: 279 NDNEASSLFPDTPRLNHSLSFVSLVSSLPPLDQNIMQDYHTSK 321


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +1

Query: 25  HIGAAFRPRATNRERCKSNLACTGRVAPSARSVHSLSAKAAALGHTVASRSSSLKVEDQT 204
           H+G  F    TN+     N   +  + P AR+    + ++   G TV  R +S  +E   
Sbjct: 641 HVGNVFMELNTNKLANAINYLISLILYPKARNESWTNTESLTTGITVDERGNSKLIEYDI 700

Query: 205 VASPPS 222
              P S
Sbjct: 701 ALQPVS 706


>SPBC31F10.06c |sar1||ADP-ribosylation factor
           Sar1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 190

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 623 FHMGGDDVSLECWEHYFNDTNSENYLIE 540
           F +GG   +   W  YF + N   YL++
Sbjct: 69  FDLGGHQQARRLWRDYFPEVNGIVYLVD 96


>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -2

Query: 626 LFHMGGDDVSLECWEHYFNDTNSENYLIE 540
           ++ +GG D     W HYF +T    ++++
Sbjct: 65  VWDVGGQDKIRPLWRHYFQNTQGIIFVVD 93


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 599 SLECWEHYFNDTNSENYLIEFTRSSLDRLRYVNGRLPNLTL 477
           +L  +E   + T+S NYL + T +S++     NG L  +TL
Sbjct: 708 NLSQFEKILSRTHS-NYLAQLTSNSIEENSRTNGALGKITL 747


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -2

Query: 629 DLFHMGGDDVSLECWEHYFNDTNSENYLIEFTRSS 525
           +++ +GG D     W HYF  T    ++++   S+
Sbjct: 68  NVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSN 102


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 26/111 (23%), Positives = 41/111 (36%)
 Frame = +1

Query: 100  VAPSARSVHSLSAKAAALGHTVASRSSSLKVEDQTVASPPSILATSFAHGRCSYTCCHEL 279
            V PS+ ++ S S+        VAS SSS      ++ S  S   ++  H   S T     
Sbjct: 670  VIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSSLSLTAMSSS 729

Query: 280  *GIPPLVSYQAPIPLFRSHASSCEMTVRIPLIDLCFHVNSRNCKPIKSADS 432
              IP  V+    I    S+     +T    ++      N  +  P  +A S
Sbjct: 730  SAIPTSVNSSTLITASSSNTLLSSITSSSAIVSSTTVSNISSNLPSATASS 780


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
 Frame = -2

Query: 650 IQLTGVDDLFHMGGDDVSLECWEH-------YFNDTNSENYLIEFTRSSLDRLRYV 504
           + +T VDD+F+    D ++  W +       Y++ TN +  +  F+  SL    YV
Sbjct: 500 LDVTNVDDVFYGWFGDKAISGWSNTNYDTYAYWHATNGQTGIASFSMGSLTADTYV 555


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,356,255
Number of Sequences: 5004
Number of extensions: 70073
Number of successful extensions: 218
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)