Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16c20
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    26   0.34 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   7.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   7.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.8  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = -2

Query: 404 LREFTWKHKSINGIRTVISHEDAWDL 327
           ++    +H + NG++T++S  D W++
Sbjct: 221 IKHINTRHNTKNGMKTLLSETDIWEV 246


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 607 SPPM*NKSSTPVSWMISVK 663
           SPP+ N  +TP  + + VK
Sbjct: 198 SPPLNNNDATPTDFSMGVK 216


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = +2

Query: 257 HTHVAMNCKGYHH*CHTKLPFH-YSGPM 337
           H H  ++   +HH  H   P H +S P+
Sbjct: 421 HGHSHIHATPHHHHSHAATPHHQHSTPL 448


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 106 PSARSVHSLSAKAAALGHTVASRS 177
           PS  SVHS S +  + GH+  S S
Sbjct: 380 PSGSSVHSDSGENNSRGHSGQSSS 403


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 615 HVKQIIDSSELDDFCKNLL*K*KQISVSW 701
           +V Q++DS  +  FC   L   + I++SW
Sbjct: 440 YVFQLLDSYAVSGFCLLFLMFFECIAISW 468


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 615 HVKQIIDSSELDDFCKNLL*K*KQISVSW 701
           +V Q++DS  +  FC   L   + I++SW
Sbjct: 493 YVFQLLDSYAVSGFCLLFLMFFECIAISW 521


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 184  LKVEDQTVASPPSILATS 237
            L+V+DQ    PPS+++ S
Sbjct: 974  LEVKDQKNGKPPSVVSRS 991


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,244
Number of Sequences: 438
Number of extensions: 4790
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)