Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16c18
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.63 
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    28   1.9  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   1.9  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.5  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   5.9  
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    26   5.9  

>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 640 GISVMPTGILPGRASSTVTFIKFIGLMLFEKASN--MPTFLVLSCKLTHPSIVSER 801
           G + +P+G L   +SS  +  K  G  LFE ASN   P+  + S  +   SI S R
Sbjct: 190 GAASLPSGGLSNLSSSLRSSSKSAGFSLFESASNSFTPSSFIESANMESLSIPSRR 245


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +1

Query: 28  RSNIGKFSVTK*SSSNITAMFSSNSILKLSVVVVGQVKSRGSTMYSGMSRPRTTSPS 198
           +SN+G   +   SS+  +  FSS+S + +S ++ G   S  S+  S  S   TT+P+
Sbjct: 500 QSNVGPVRI---SSNRRSRKFSSSSRVSVSNLLAGSPPSPSSSTKSASSSYSTTTPA 553


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 4/137 (2%)
 Frame = +1

Query: 64   SSSNITAMFSSNSILKLSVVVVGQVK----SRGSTMYSGMSRPRTTSPSPIWIFWISVAS 231
            SSS +++  SS + L  S+ V   V     S GS   S +     ++ S  W    S ++
Sbjct: 877  SSSVVSSSLSSTTSLSTSIPVTSSVAPAVTSTGSETSSVVGSGTDSATSSSWTAETSSSA 936

Query: 232  LE*PSAQPHVSTRTNCSSMDLMGTEHSSTLIFPVTGASNAQTVEVRSANTEKCGTVPAAR 411
            +    A     T ++ +S     +E   +     TG+S +       + +       A+ 
Sbjct: 937  ITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATASVSGSSTSSVATASA 996

Query: 412  TDAPDISHRTPFCTGRS 462
            TD+   S      TG S
Sbjct: 997  TDSSTSSIAAASVTGSS 1013


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +1

Query: 244 SAQPHVSTRTNC-SSMDLMGTEHSSTLIFPVTGASNAQTVEVRSANTEKCGTVPAARTDA 420
           S+ P +ST T+C +S  +  T +S+T + P    +++ T  + + N     +VP   T  
Sbjct: 382 SSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSST-PLTTTNCTTSTSVPYTSTPV 440

Query: 421 PDISHRTPFCT 453
                 T  CT
Sbjct: 441 TSTPLATTNCT 451



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 25/91 (27%), Positives = 44/91 (48%)
 Frame = +1

Query: 64  SSSNITAMFSSNSILKLSVVVVGQVKSRGSTMYSGMSRPRTTSPSPIWIFWISVASLE*P 243
           ++SN     S++     S+   G   S  ST  +    P +TS + I I   S +S +  
Sbjct: 160 TNSNPLPTTSTSCTTSTSIPPTGGSSSL-STPITPTVPPTSTSSTSIPIPPTSTSSTD-T 217

Query: 244 SAQPHVSTRTNCSSMDLMGTEHSSTLIFPVT 336
           ++ P  +T T+C++   + T  SS+L  P+T
Sbjct: 218 NSSPLPTTSTSCTTSTSIPTGGSSSLSTPIT 248


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 20/78 (25%), Positives = 35/78 (44%)
 Frame = -3

Query: 731 FSNSIKPINLINVTVELALPGKIPVGITEIPFEMPLRARQAVSPGYPGLLETYHGVFVNI 552
           FSN +   N++NVTV +  PG I    T + F+  + +     P  P  +  +H   V+ 
Sbjct: 695 FSNKVVKDNVVNVTVTVEHPGLI---WTVVSFDADVLSWSL--PEVPSTVRRHHVREVSA 749

Query: 551 MYTLKCNMKRSFLNKPLF 498
                 +   S+L  P++
Sbjct: 750 YGLDSYSFNMSYLEAPIY 767


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 423 GHLAPHTLLYWAFLMSILYKELASG 497
           G L  ++LL+W  LM +LY  +  G
Sbjct: 80  GKLRNNSLLFWKSLMGLLYSTMVCG 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,621,034
Number of Sequences: 5004
Number of extensions: 75431
Number of successful extensions: 218
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)