Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16c18
(850 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D87343-1|BAA23225.1| 297|Homo sapiens DCRA protein. 308 1e-83
BC110655-1|AAI10656.1| 297|Homo sapiens Down syndrome critical ... 308 1e-83
AJ001867-1|CAA05058.1| 254|Homo sapiens hypothetical protein pr... 216 1e-55
BC022505-1|AAH22505.1| 327|Homo sapiens vacuolar protein sortin... 53 2e-06
AL596223-4|CAH71501.1| 327|Homo sapiens vacuolar protein sortin... 53 2e-06
AL442635-2|CAH71779.1| 327|Homo sapiens vacuolar protein sortin... 53 2e-06
AK022992-1|BAB14351.1| 327|Homo sapiens protein ( Homo sapiens ... 53 2e-06
AF175266-1|AAF89954.1| 327|Homo sapiens vacuolar sorting protei... 52 2e-06
BC098386-1|AAH98386.1| 336|Homo sapiens vacuolar protein sortin... 46 1e-04
BC014128-1|AAH14128.1| 336|Homo sapiens vacuolar protein sortin... 46 1e-04
BC009747-1|AAH09747.1| 336|Homo sapiens vacuolar protein sortin... 46 1e-04
Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein. 31 7.0
X74955-1|CAA52910.1| 622|Homo sapiens mucin protein. 31 7.0
BC020172-1|AAH20172.1| 514|Homo sapiens zinc finger and BTB dom... 31 7.0
AL590413-2|CAI13589.1| 514|Homo sapiens zinc finger and BTB dom... 31 7.0
AF489528-1|AAM03124.1| 1394|Homo sapiens transforming growth fac... 31 7.0
AB040916-1|BAA96007.1| 428|Homo sapiens KIAA1483 protein protein. 31 7.0
BC130289-1|AAI30290.1| 1395|Homo sapiens latent transforming gro... 30 9.2
AC020594-1|AAY15036.1| 150|Homo sapiens unknown protein. 30 9.2
AB208801-1|BAD92038.1| 1348|Homo sapiens latent transforming gro... 30 9.2
>D87343-1|BAA23225.1| 297|Homo sapiens DCRA protein.
Length = 297
Score = 308 bits (757), Expect = 1e-83
Identities = 152/277 (54%), Positives = 191/277 (68%), Gaps = 5/277 (1%)
Frame = -3
Query: 839 LVVESSSDVRHEGLSLTMEGCVNLQLSTKNVGIFEAFSNSIKPINLINVTVELALPGKIP 660
+V+ S V+H+G+SLTMEG VNLQLS K+VG+FEAF NS+KPI +IN T+E+ PGK P
Sbjct: 26 VVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAFYNSVKPIQIINSTIEMVKPGKFP 85
Query: 659 VGITEIPFEMPLRARQAVSPGYPGLLETYHGVFVNIMYTLKCNMKRSFLNKPLFTTCQFF 480
G TEIPFE PL + G L ETYHGVFVNI YTL+C+MKRS L K L TC+F
Sbjct: 86 SGKTEIPFEFPLHLK-----GNKVLYETYHGVFVNIQYTLRCDMKRSLLAKDLTKTCEFI 140
Query: 479 VQYRHQE-----RPVQKGVRCEMSGASVRAAGTVPHFSVFADLTSTVCALDAPVTGKIRV 315
V Q+ PV + E +V+ +P F + L ST C + P+TG++ V
Sbjct: 141 VHSAPQKGKFTPSPVDFTITPETL-QNVKERALLPKFLLRGHLNSTNCVITQPLTGELVV 199
Query: 314 DECSVPIKSIELQLVRVETCGCADGYSRDATEIQNIQIGEGDVVRGRDIPLYMVLPRLFT 135
+ I+S+ELQLVRVETCGCA+GY+RDATEIQNIQI +GDV RG +P+YMV PRLFT
Sbjct: 200 ESSEAAIRSVELQLVRVETCGCAEGYARDATEIQNIQIADGDVCRGLSVPIYMVFPRLFT 259
Query: 134 CPTTTTLNFKIEFELNIAVIFEDDYLVTENFPILLLR 24
CPT T NFK+EFE+NI V+ D+L+TENFP+ L R
Sbjct: 260 CPTLETTNFKVEFEVNIVVLLHPDHLITENFPLKLCR 296
>BC110655-1|AAI10656.1| 297|Homo sapiens Down syndrome critical
region gene 3 protein.
Length = 297
Score = 308 bits (757), Expect = 1e-83
Identities = 152/277 (54%), Positives = 191/277 (68%), Gaps = 5/277 (1%)
Frame = -3
Query: 839 LVVESSSDVRHEGLSLTMEGCVNLQLSTKNVGIFEAFSNSIKPINLINVTVELALPGKIP 660
+V+ S V+H+G+SLTMEG VNLQLS K+VG+FEAF NS+KPI +IN T+E+ PGK P
Sbjct: 26 VVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAFYNSVKPIQIINSTIEMVKPGKFP 85
Query: 659 VGITEIPFEMPLRARQAVSPGYPGLLETYHGVFVNIMYTLKCNMKRSFLNKPLFTTCQFF 480
G TEIPFE PL + G L ETYHGVFVNI YTL+C+MKRS L K L TC+F
Sbjct: 86 SGKTEIPFEFPLHLK-----GNKVLYETYHGVFVNIQYTLRCDMKRSLLAKDLTKTCEFI 140
Query: 479 VQYRHQE-----RPVQKGVRCEMSGASVRAAGTVPHFSVFADLTSTVCALDAPVTGKIRV 315
V Q+ PV + E +V+ +P F + L ST C + P+TG++ V
Sbjct: 141 VHSAPQKGKFTPSPVDFTITPETL-QNVKERALLPKFLLRGHLNSTNCVITQPLTGELVV 199
Query: 314 DECSVPIKSIELQLVRVETCGCADGYSRDATEIQNIQIGEGDVVRGRDIPLYMVLPRLFT 135
+ I+S+ELQLVRVETCGCA+GY+RDATEIQNIQI +GDV RG +P+YMV PRLFT
Sbjct: 200 ESSEAAIRSVELQLVRVETCGCAEGYARDATEIQNIQIADGDVCRGLSVPIYMVFPRLFT 259
Query: 134 CPTTTTLNFKIEFELNIAVIFEDDYLVTENFPILLLR 24
CPT T NFK+EFE+NI V+ D+L+TENFP+ L R
Sbjct: 260 CPTLETTNFKVEFEVNIVVLLHPDHLITENFPLKLCR 296
>AJ001867-1|CAA05058.1| 254|Homo sapiens hypothetical protein
protein.
Length = 254
Score = 216 bits (527), Expect = 1e-55
Identities = 127/262 (48%), Positives = 153/262 (58%), Gaps = 7/262 (2%)
Frame = -3
Query: 788 MEGCVNLQLSTKNVGIFEAFSNSIKPINLINVTVELALPGKIPVGITEIPFEMPLRARQA 609
MEG VNLQ S K+VG+FEAF NS+KPI +IN T+E+ PGK P G TEIPFE PL +
Sbjct: 1 MEGTVNLQPSAKSVGVFEAFYNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHLK-- 58
Query: 608 VSPGYPGLLETYHGVFVNIMYTLKCNMKRSFLNKPLFTTCQFFVQYRHQE-----RPVQK 444
G L ETYHGVFVNI YTL+C+MKRS L K L TC+F V Q+ PV
Sbjct: 59 ---GNKVLYETYHGVFVNIQYTLRCDMKRSLLAKDLTKTCEFIVHSAPQKGKFTPSPVDF 115
Query: 443 GVRCE-MSGASVRAAGTVPHFSVFADLTSTVCALDAPVTGKIRVDEC-SVPIKSIELQLV 270
+ E + RA P F + A G+ E S K
Sbjct: 116 TIIPEPLQSVKERA---FPKFLLRRTSQLNKLCHHAATNGRAGGGELGSRHQKRGAAAGA 172
Query: 269 RVETCGCADGYSRDATEIQNIQIGEGDVVRGRDIPLYMVLPRLFTCPTTTTLNFKIEFEL 90
R + C Y+RDATEIQNIQI +GDV RG +P+YMV PRLFTCPT T NFK+EFE+
Sbjct: 173 RGDVRVCR-SYARDATEIQNIQIADGDVCRGLSVPIYMVSPRLFTCPTQETTNFKVEFEV 231
Query: 89 NIAVIFEDDYLVTENFPILLLR 24
NI V+ D+L+TENFP+ L R
Sbjct: 232 NIVVLLHPDHLITENFPLKLCR 253
>BC022505-1|AAH22505.1| 327|Homo sapiens vacuolar protein sorting
26 homolog A (S. pombe) protein.
Length = 327
Score = 52.8 bits (121), Expect = 2e-06
Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 2/244 (0%)
Frame = -3
Query: 749 VGIFEAFSNSIKPINLINVTVELALPGKIPVGITEIPFEMPLRARQAVSPGYPGLLETYH 570
VG E F++ +N+ ELALPG++ FE Q P E+Y
Sbjct: 73 VGQIELFNDKSNTHEFVNLVKELALPGELTQS-RSYDFEF----MQVEKP-----YESYI 122
Query: 569 GVFVNIMYTLKCNMKRSFLNKPLFTTCQFFVQYRHQERPVQKGVRCEMSGASVRAAGTVP 390
G V + Y LK + R + L V V ++ E+ G
Sbjct: 123 GANVRLRYFLKVTIVRRLTD--LVKEYDLIVHQLATYPDVNNSIKMEV--------GIED 172
Query: 389 HFSVFADLTSTVCALDAPVTGKIRVDECSVPIKSIELQLVRVETCGCADGYSRDATEIQN 210
+ + + L + GKI + I+ +ELQL++ E G + + I
Sbjct: 173 CLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAK 232
Query: 209 IQIGEGDVVRGRDIPLYMVLPRLFTCPTTTTLN--FKIEFELNIAVIFEDDYLVTENFPI 36
+I +G V+G IP+ + L PT +N F + + LN+ ++ E+D + I
Sbjct: 233 YEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEI 292
Query: 35 LLLR 24
+L R
Sbjct: 293 ILWR 296
>AL596223-4|CAH71501.1| 327|Homo sapiens vacuolar protein sorting
26 homolog A (S. pombe) protein.
Length = 327
Score = 52.8 bits (121), Expect = 2e-06
Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 2/244 (0%)
Frame = -3
Query: 749 VGIFEAFSNSIKPINLINVTVELALPGKIPVGITEIPFEMPLRARQAVSPGYPGLLETYH 570
VG E F++ +N+ ELALPG++ FE Q P E+Y
Sbjct: 73 VGQIELFNDKSNTHEFVNLVKELALPGELTQS-RSYDFEF----MQVEKP-----YESYI 122
Query: 569 GVFVNIMYTLKCNMKRSFLNKPLFTTCQFFVQYRHQERPVQKGVRCEMSGASVRAAGTVP 390
G V + Y LK + R + L V V ++ E+ G
Sbjct: 123 GANVRLRYFLKVTIVRRLTD--LVKEYDLIVHQLATYPDVNNSIKMEV--------GIED 172
Query: 389 HFSVFADLTSTVCALDAPVTGKIRVDECSVPIKSIELQLVRVETCGCADGYSRDATEIQN 210
+ + + L + GKI + I+ +ELQL++ E G + + I
Sbjct: 173 CLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAK 232
Query: 209 IQIGEGDVVRGRDIPLYMVLPRLFTCPTTTTLN--FKIEFELNIAVIFEDDYLVTENFPI 36
+I +G V+G IP+ + L PT +N F + + LN+ ++ E+D + I
Sbjct: 233 YEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEI 292
Query: 35 LLLR 24
+L R
Sbjct: 293 ILWR 296
>AL442635-2|CAH71779.1| 327|Homo sapiens vacuolar protein sorting
26 homolog A (S. pombe) protein.
Length = 327
Score = 52.8 bits (121), Expect = 2e-06
Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 2/244 (0%)
Frame = -3
Query: 749 VGIFEAFSNSIKPINLINVTVELALPGKIPVGITEIPFEMPLRARQAVSPGYPGLLETYH 570
VG E F++ +N+ ELALPG++ FE Q P E+Y
Sbjct: 73 VGQIELFNDKSNTHEFVNLVKELALPGELTQS-RSYDFEF----MQVEKP-----YESYI 122
Query: 569 GVFVNIMYTLKCNMKRSFLNKPLFTTCQFFVQYRHQERPVQKGVRCEMSGASVRAAGTVP 390
G V + Y LK + R + L V V ++ E+ G
Sbjct: 123 GANVRLRYFLKVTIVRRLTD--LVKEYDLIVHQLATYPDVNNSIKMEV--------GIED 172
Query: 389 HFSVFADLTSTVCALDAPVTGKIRVDECSVPIKSIELQLVRVETCGCADGYSRDATEIQN 210
+ + + L + GKI + I+ +ELQL++ E G + + I
Sbjct: 173 CLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAK 232
Query: 209 IQIGEGDVVRGRDIPLYMVLPRLFTCPTTTTLN--FKIEFELNIAVIFEDDYLVTENFPI 36
+I +G V+G IP+ + L PT +N F + + LN+ ++ E+D + I
Sbjct: 233 YEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEI 292
Query: 35 LLLR 24
+L R
Sbjct: 293 ILWR 296
>AK022992-1|BAB14351.1| 327|Homo sapiens protein ( Homo sapiens
cDNA FLJ12930 fis, clone NT2RP2004816, highly similar to
H58 PROTEIN. ).
Length = 327
Score = 52.8 bits (121), Expect = 2e-06
Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 2/244 (0%)
Frame = -3
Query: 749 VGIFEAFSNSIKPINLINVTVELALPGKIPVGITEIPFEMPLRARQAVSPGYPGLLETYH 570
VG E F++ +N+ ELALPG++ FE Q P E+Y
Sbjct: 73 VGRIELFNDKSNTHEFVNLVKELALPGELTQS-RSYDFEF----MQVEKP-----YESYI 122
Query: 569 GVFVNIMYTLKCNMKRSFLNKPLFTTCQFFVQYRHQERPVQKGVRCEMSGASVRAAGTVP 390
G V + Y LK + R + L V V ++ E+ G
Sbjct: 123 GANVRLRYFLKVTIVRRLTD--LVKEYDLIVHQLATYPDVNNSIKMEV--------GIED 172
Query: 389 HFSVFADLTSTVCALDAPVTGKIRVDECSVPIKSIELQLVRVETCGCADGYSRDATEIQN 210
+ + + L + GKI + I+ +ELQL++ E G + + I
Sbjct: 173 CLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAK 232
Query: 209 IQIGEGDVVRGRDIPLYMVLPRLFTCPTTTTLN--FKIEFELNIAVIFEDDYLVTENFPI 36
+I +G V+G IP+ + L PT +N F + + LN+ ++ E+D + I
Sbjct: 233 YEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEI 292
Query: 35 LLLR 24
+L R
Sbjct: 293 ILWR 296
>AF175266-1|AAF89954.1| 327|Homo sapiens vacuolar sorting protein
26 protein.
Length = 327
Score = 52.4 bits (120), Expect = 2e-06
Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 2/244 (0%)
Frame = -3
Query: 749 VGIFEAFSNSIKPINLINVTVELALPGKIPVGITEIPFEMPLRARQAVSPGYPGLLETYH 570
VG E F++ +N+ ELALPG++ FE Q P E+Y
Sbjct: 73 VGQIELFNDKSNTHEFVNLVKELALPGELTQS-RSYDFEF----MQVEKP-----YESYI 122
Query: 569 GVFVNIMYTLKCNMKRSFLNKPLFTTCQFFVQYRHQERPVQKGVRCEMSGASVRAAGTVP 390
G V + Y LK + R + L V V ++ E+ G
Sbjct: 123 GANVRLRYFLKVTIVRRLTD--LVKEYDLIVHQLATYPDVNNSIKMEV--------GIED 172
Query: 389 HFSVFADLTSTVCALDAPVTGKIRVDECSVPIKSIELQLVRVETCGCADGYSRDATEIQN 210
+ + + L + GKI + I+ +ELQL++ E G + + I
Sbjct: 173 CLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAK 232
Query: 209 IQIGEGDVVRGRDIPLYMVLPRLFTCPTTTTLN--FKIEFELNIAVIFEDDYLVTENFPI 36
+I +G V+G IP+ + L PT +N F + + LN+ ++ E+D + I
Sbjct: 233 YEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRSSFKQQEI 292
Query: 35 LLLR 24
+L R
Sbjct: 293 ILWR 296
>BC098386-1|AAH98386.1| 336|Homo sapiens vacuolar protein sorting
26 homolog B (S. pombe) protein.
Length = 336
Score = 46.4 bits (105), Expect = 1e-04
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = -3
Query: 335 VTGKIRVDECSVPIKSIELQLVRVETCGCADGYSRDATEIQNIQIGEGDVVRGRDIPLYM 156
+ GKI + IK +E+ +++ ET G + I +I +G VRG IP+ +
Sbjct: 189 IVGKIYFLLVRIKIKHMEIDIIKRETTGTGPNVYHENDTIAKYEIMDGAPVRGESIPIRL 248
Query: 155 VLPRLFTCPTTTTLN--FKIEFELNIAVIFEDDYLVTENFPILLLR 24
L PT +N F + + LN+ +I E++ + ++L R
Sbjct: 249 FLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEVVLWR 294
>BC014128-1|AAH14128.1| 336|Homo sapiens vacuolar protein sorting
26 homolog B (S. pombe) protein.
Length = 336
Score = 46.4 bits (105), Expect = 1e-04
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = -3
Query: 335 VTGKIRVDECSVPIKSIELQLVRVETCGCADGYSRDATEIQNIQIGEGDVVRGRDIPLYM 156
+ GKI + IK +E+ +++ ET G + I +I +G VRG IP+ +
Sbjct: 189 IVGKIYFLLVRIKIKHMEIDIIKRETTGTGPNVYHENDTIAKYEIMDGAPVRGESIPIRL 248
Query: 155 VLPRLFTCPTTTTLN--FKIEFELNIAVIFEDDYLVTENFPILLLR 24
L PT +N F + + LN+ +I E++ + ++L R
Sbjct: 249 FLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEVVLWR 294
>BC009747-1|AAH09747.1| 336|Homo sapiens vacuolar protein sorting
26 homolog B (S. pombe) protein.
Length = 336
Score = 46.4 bits (105), Expect = 1e-04
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = -3
Query: 335 VTGKIRVDECSVPIKSIELQLVRVETCGCADGYSRDATEIQNIQIGEGDVVRGRDIPLYM 156
+ GKI + IK +E+ +++ ET G + I +I +G VRG IP+ +
Sbjct: 189 IVGKIYFLLVRIKIKHMEIDIIKRETTGTGPNVYHENDTIAKYEIMDGAPVRGESIPIRL 248
Query: 155 VLPRLFTCPTTTTLN--FKIEFELNIAVIFEDDYLVTENFPILLLR 24
L PT +N F + + LN+ +I E++ + ++L R
Sbjct: 249 FLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEVVLWR 294
>Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein.
Length = 3570
Score = 30.7 bits (66), Expect = 7.0
Identities = 23/87 (26%), Positives = 39/87 (44%)
Frame = +1
Query: 172 SRPRTTSPSPIWIFWISVASLE*PSAQPHVSTRTNCSSMDLMGTEHSSTLIFPVTGASNA 351
S P T P+WI + + P+ ST T S + GT H++ ++ T
Sbjct: 3223 SSPGTALTPPVWISTTTTPTTTTPTTSG--STVTPSS---IPGTTHTARVLTTTTTTVAT 3277
Query: 352 QTVEVRSANTEKCGTVPAARTDAPDIS 432
++ S++T+ GT P+ T A I+
Sbjct: 3278 GSMATPSSSTQTSGTPPSLTTTATTIT 3304
>X74955-1|CAA52910.1| 622|Homo sapiens mucin protein.
Length = 622
Score = 30.7 bits (66), Expect = 7.0
Identities = 23/87 (26%), Positives = 39/87 (44%)
Frame = +1
Query: 172 SRPRTTSPSPIWIFWISVASLE*PSAQPHVSTRTNCSSMDLMGTEHSSTLIFPVTGASNA 351
S P T P+WI + + P+ ST T S + GT H++ ++ T
Sbjct: 438 SSPGTALTPPVWISTTTTPTTTTPTTSG--STVTPSS---IPGTTHTARVLTTTTTTVAT 492
Query: 352 QTVEVRSANTEKCGTVPAARTDAPDIS 432
++ S++T+ GT P+ T A I+
Sbjct: 493 GSMATPSSSTQTSGTPPSLTTTATTIT 519
>BC020172-1|AAH20172.1| 514|Homo sapiens zinc finger and BTB domain
containing 2 protein.
Length = 514
Score = 30.7 bits (66), Expect = 7.0
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = -1
Query: 496 PLASSLYSIDIKNAQYRRVCGARCPVRRCALRAQCRTSLCSQISPPPSARWMHLSLERSE 317
PLASSLY I I + Q R+ + + +TS SQ P +++ L+ ++
Sbjct: 127 PLASSLYGIQIADHQLRQATKIASAPEKLGRDPRPQTSRISQEQVPEASQLSQLTSNLAQ 186
Query: 316 LTSARY-PSSPL 284
+ PS PL
Sbjct: 187 VNRTNMTPSDPL 198
>AL590413-2|CAI13589.1| 514|Homo sapiens zinc finger and BTB domain
containing 2 protein.
Length = 514
Score = 30.7 bits (66), Expect = 7.0
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = -1
Query: 496 PLASSLYSIDIKNAQYRRVCGARCPVRRCALRAQCRTSLCSQISPPPSARWMHLSLERSE 317
PLASSLY I I + Q R+ + + +TS SQ P +++ L+ ++
Sbjct: 127 PLASSLYGIQIADHQLRQATKIASAPEKLGRDPRPQTSRISQEQVPEASQLSQLTSNLAQ 186
Query: 316 LTSARY-PSSPL 284
+ PS PL
Sbjct: 187 VNRTNMTPSDPL 198
>AF489528-1|AAM03124.1| 1394|Homo sapiens transforming growth
factor-beta binding protein-1S protein.
Length = 1394
Score = 30.7 bits (66), Expect = 7.0
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -3
Query: 326 KIRVDECSVPIKSIELQLVRVE---TCGCADGYSRDATEIQNIQIGEGDVVRGR 174
+++ +EC + + VRV+ TC C DGY D ++ + + E D + R
Sbjct: 1292 ELQAEECGILNGCENGRCVRVQEGYTCDCLDGYHLDTAKMTCVDVNECDELNNR 1345
>AB040916-1|BAA96007.1| 428|Homo sapiens KIAA1483 protein protein.
Length = 428
Score = 30.7 bits (66), Expect = 7.0
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = -1
Query: 496 PLASSLYSIDIKNAQYRRVCGARCPVRRCALRAQCRTSLCSQISPPPSARWMHLSLERSE 317
PLASSLY I I + Q R+ + + +TS SQ P +++ L+ ++
Sbjct: 41 PLASSLYGIQIADHQLRQATKIASAPEKLGRDPRPQTSRISQEQVPEASQLSQLTSNLAQ 100
Query: 316 LTSARY-PSSPL 284
+ PS PL
Sbjct: 101 VNRTNMTPSDPL 112
>BC130289-1|AAI30290.1| 1395|Homo sapiens latent transforming growth
factor beta binding protein 1 protein.
Length = 1395
Score = 30.3 bits (65), Expect = 9.2
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -3
Query: 326 KIRVDECSVPIKSIELQLVRVE---TCGCADGYSRDATEIQNIQIGEGDVVRGR 174
+++ +EC + + VRV+ TC C DGY D ++ + + E D + R
Sbjct: 1293 ELQAEECGILNGCENGRCVRVQEGYTCDCFDGYHLDTAKMTCVDVNECDELNNR 1346
>AC020594-1|AAY15036.1| 150|Homo sapiens unknown protein.
Length = 150
Score = 30.3 bits (65), Expect = 9.2
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -3
Query: 326 KIRVDECSVPIKSIELQLVRVE---TCGCADGYSRDATEIQNIQIGEGDVVRGR 174
+++ +EC + + VRV+ TC C DGY D ++ + + E D + R
Sbjct: 48 ELQAEECGILNGCENGRCVRVQEGYTCDCFDGYHLDTAKMTCVDVNECDELNNR 101
>AB208801-1|BAD92038.1| 1348|Homo sapiens latent transforming growth
factor beta binding protein 1 isoform LTBP-1S varian
protein.
Length = 1348
Score = 30.3 bits (65), Expect = 9.2
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -3
Query: 326 KIRVDECSVPIKSIELQLVRVE---TCGCADGYSRDATEIQNIQIGEGDVVRGR 174
+++ +EC + + VRV+ TC C DGY D ++ + + E D + R
Sbjct: 1246 ELQAEECGILNGCENGRCVRVQEGYTCDCFDGYHLDTAKMTCVDVNECDELNNR 1299
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,487,730
Number of Sequences: 237096
Number of extensions: 3121037
Number of successful extensions: 12069
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 11352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12057
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10761200974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -