Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16c18
(850 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68220-4|CAA92489.2| 408|Caenorhabditis elegans Hypothetical pr... 46 4e-05
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 33 0.34
Z70204-4|CAA94114.2| 437|Caenorhabditis elegans Hypothetical pr... 29 3.2
AY305832-1|AAR11977.1| 437|Caenorhabditis elegans nuclear recep... 29 3.2
AY305831-1|AAR11976.1| 437|Caenorhabditis elegans nuclear recep... 29 3.2
AF273774-1|AAG15123.1| 433|Caenorhabditis elegans nuclear recep... 29 3.2
AF024490-2|AAB70309.1| 338|Caenorhabditis elegans Hypothetical ... 29 3.2
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z70205-4|CAA94115.2| 528|Caenorhabditis elegans Hypothetical pr... 28 7.3
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum... 28 7.3
>Z68220-4|CAA92489.2| 408|Caenorhabditis elegans Hypothetical
protein T20D3.7 protein.
Length = 408
Score = 45.6 bits (103), Expect = 4e-05
Identities = 50/233 (21%), Positives = 91/233 (39%), Gaps = 4/233 (1%)
Frame = -3
Query: 749 VGIFEAFSNSIKPINLINVTVELALPGKIPVGITEIPFEMPLRARQAVSPGYPGLLETYH 570
+G E + + + I++T ELA PG + + PFE P ETY
Sbjct: 124 IGQIEVYYDRGNQQDFISLTRELARPGDLTQN-AQFPFEF----NNVEKP-----FETYM 173
Query: 569 GVFVNIMYTLKCNMKRSF--LNKPLFTTCQFFVQYRHQERPVQKGVRCEMSGASVRAAGT 396
G V + Y L+ + R L K L Y ++ ++ V G
Sbjct: 174 GTNVKLRYFLRVTVIRRLTDLTKELDLVVHALSSYPDNDKSIKMEV------------GI 221
Query: 395 VPHFSVFADLTSTVCALDAPVTGKIRVDECSVPIKSIELQLVRVETCGCADGYSRDATEI 216
+ + L + GKI + IK +E+ +++ E G +++ +
Sbjct: 222 EDCLHIEFEYNKNKYHLQDVIVGKIYFLLVRIKIKYMEIAILKTEVVGSGPNTFKESETV 281
Query: 215 QNIQIGEGDVVRGRDIPLYMVLPRLFTCPTTTTL--NFKIEFELNIAVIFEDD 63
+I +G VRG IP+ + L P+ + F +++ LN+ ++ E+D
Sbjct: 282 AKFEIMDGAPVRGESIPIRLFLAGYDLAPSMRDVGKKFSVKYFLNLVLVDEED 334
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 32.7 bits (71), Expect = 0.34
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 2/122 (1%)
Frame = +1
Query: 64 SSSNITAMFSSNSILKLSVVVVGQVKSRGSTMYSGMSRPRTTSPSPIWIF--WISVASLE 237
SS + + S +S + G + GS+ SG+S +S P S S
Sbjct: 1848 SSGTVGSTISESSTTASASSQTGSTVTMGSSSTSGVSTSSASSTQPQMSTSQGSSAGSTV 1907
Query: 238 *PSAQPHVSTRTNCSSMDLMGTEHSSTLIFPVTGASNAQTVEVRSANTEKCGTVPAARTD 417
S VST T SS MG+ S T+ ++ +S A + ++ +T G+
Sbjct: 1908 ASSTAGLVSTSTVPSSTGTMGSTSSGTVGSTISESSTAASTSSQTGSTVTIGSTSGTNPS 1967
Query: 418 AP 423
+P
Sbjct: 1968 SP 1969
Score = 30.7 bits (66), Expect = 1.4
Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 2/140 (1%)
Frame = +1
Query: 31 SNIGKFSVTK*SSSNITAMFSSNSILKLSVVVVGQVKSRGSTMYSGMSRPRTTSPSPIWI 210
S+ G S T SS + + S +S + G + GS+ SG+S +S P
Sbjct: 1517 SSTGTMSST--SSGTVGSTISESSTTASASSQTGSTVTMGSSSTSGVSTSSASSTQPQMS 1574
Query: 211 F--WISVASLE*PSAQPHVSTRTNCSSMDLMGTEHSSTLIFPVTGASNAQTVEVRSANTE 384
S S S VST T SS MG+ S T+ ++ +S + ++ +T
Sbjct: 1575 TSQGSSAGSTVASSTAGLVSTSTVPSSTGTMGSTSSGTVGSTISESSTTASASSQTGSTV 1634
Query: 385 KCGTVPAARTDAPDISHRTP 444
G+ + S P
Sbjct: 1635 TMGSSSTSGVSTSSASSTQP 1654
Score = 30.7 bits (66), Expect = 1.4
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 2/129 (1%)
Frame = +1
Query: 64 SSSNITAMFSSNSILKLSVVVVGQVKSRGSTMYSGMSRPRTTSPSPIWIF--WISVASLE 237
SS + + S +S + G + GS+ SG+S +S P S S
Sbjct: 1609 SSGTVGSTISESSTTASASSQTGSTVTMGSSSTSGVSTSSASSTQPQMSTSQGSSAGSTV 1668
Query: 238 *PSAQPHVSTRTNCSSMDLMGTEHSSTLIFPVTGASNAQTVEVRSANTEKCGTVPAARTD 417
S VST T SS MG+ S T+ ++ +S A + ++ +T G+ +
Sbjct: 1669 ASSTTGLVSTSTVPSSTGTMGSTSSGTVGSTISESSTAASASSQTGSTVTMGSSSTSGVS 1728
Query: 418 APDISHRTP 444
S P
Sbjct: 1729 TSSASSGQP 1737
>Z70204-4|CAA94114.2| 437|Caenorhabditis elegans Hypothetical
protein C11G6.4a protein.
Length = 437
Score = 29.5 bits (63), Expect = 3.2
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = -1
Query: 520 HFSISHCSPLASSLY-SIDIKNAQYRRVCGARCPVR---RCALRAQCRTSLCSQISPPPS 353
HF C A+ S+ + A R G C ++ RC RA CR + C + S
Sbjct: 19 HFGAEACRACAAFFRRSVALNKAYVCRAMGT-CVIQKNVRCMCRA-CRFTKCIAVGMRKS 76
Query: 352 ARWMHLSLERSELTSARYPSSP 287
A H L S+ TS+ S+P
Sbjct: 77 AVQRHRELFASQETSSESSSNP 98
>AY305832-1|AAR11977.1| 437|Caenorhabditis elegans nuclear receptor
NHR-28 protein.
Length = 437
Score = 29.5 bits (63), Expect = 3.2
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = -1
Query: 520 HFSISHCSPLASSLY-SIDIKNAQYRRVCGARCPVR---RCALRAQCRTSLCSQISPPPS 353
HF C A+ S+ + A R G C ++ RC RA CR + C + S
Sbjct: 19 HFGAEACRACAAFFRRSVALNKAYVCRAMGT-CVIQKNVRCMCRA-CRFTKCIAVGMRKS 76
Query: 352 ARWMHLSLERSELTSARYPSSP 287
A H L S+ TS+ S+P
Sbjct: 77 AVQRHRELFASQETSSESSSNP 98
>AY305831-1|AAR11976.1| 437|Caenorhabditis elegans nuclear receptor
NHR-28 protein.
Length = 437
Score = 29.5 bits (63), Expect = 3.2
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = -1
Query: 520 HFSISHCSPLASSLY-SIDIKNAQYRRVCGARCPVR---RCALRAQCRTSLCSQISPPPS 353
HF C A+ S+ + A R G C ++ RC RA CR + C + S
Sbjct: 19 HFGAEACRACAAFFRRSVALNKAYVCRAMGT-CVIQKNVRCMCRA-CRFTKCIAVGMRKS 76
Query: 352 ARWMHLSLERSELTSARYPSSP 287
A H L S+ TS+ S+P
Sbjct: 77 AVQRHRELFASQETSSESSSNP 98
>AF273774-1|AAG15123.1| 433|Caenorhabditis elegans nuclear receptor
NHR-28 protein.
Length = 433
Score = 29.5 bits (63), Expect = 3.2
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = -1
Query: 520 HFSISHCSPLASSLY-SIDIKNAQYRRVCGARCPVR---RCALRAQCRTSLCSQISPPPS 353
HF C A+ S+ + A R G C ++ RC RA CR + C + S
Sbjct: 15 HFGAEACRACAAFFRRSVALNKAYVCRAMGT-CVIQKNVRCMCRA-CRFTKCIAVGMRKS 72
Query: 352 ARWMHLSLERSELTSARYPSSP 287
A H L S+ TS+ S+P
Sbjct: 73 AVQRHRELFASQETSSESSSNP 94
>AF024490-2|AAB70309.1| 338|Caenorhabditis elegans Hypothetical
protein C02H6.2 protein.
Length = 338
Score = 29.5 bits (63), Expect = 3.2
Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 6/113 (5%)
Frame = -3
Query: 827 SSSDVRHEGLSLTMEGCVNLQLSTKNVGIFEAFS---NSIKPINLINVTVELALPGKIPV 657
++S+ ++ SL + G L +N+ FE F + NV L P K
Sbjct: 224 TTSEQWNKAKSLEITGYCTLPKEMENLFHFEHFQLLLTQFSKTDASNVKKALRKPSKFVS 283
Query: 656 GITEIPFEMPLRARQAVSPGYPGLLE---TYHGVFVNIMYTLKCNMKRSFLNK 507
G EI P P Y G + Y+ + N M+ L + KR + K
Sbjct: 284 GTFEIFIYNPAEVASVFDPQYTGGINGSIDYNVLEANSMFRLIFSQKRMIIEK 336
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
protein F36F2.3a protein.
Length = 1128
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/81 (25%), Positives = 35/81 (43%)
Frame = -3
Query: 827 SSSDVRHEGLSLTMEGCVNLQLSTKNVGIFEAFSNSIKPINLINVTVELALPGKIPVGIT 648
S S + G+S G +Q T + S S +P N+ + L ++P +
Sbjct: 340 SQSQITPSGIS---PGSTLVQQQTTLTSVSSGTSLSAQPSNVNPSIPGIPLASQVPSMVQ 396
Query: 647 EIPFEMPLRARQAVSPGYPGL 585
++ P + RQ + PG PGL
Sbjct: 397 DVSLPPP-QLRQELPPGIPGL 416
>Z70205-4|CAA94115.2| 528|Caenorhabditis elegans Hypothetical
protein C11H1.5 protein.
Length = 528
Score = 28.3 bits (60), Expect = 7.3
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +1
Query: 109 KLSVVVVGQVKSRGSTMYSGMSRPRTTSPSPIWIFWIS--VASLE*PSAQPHVSTRTNCS 282
KLS ++V + R S M SG P T+P+ I + S +S++ +A ST T+ +
Sbjct: 289 KLSKILVDAYRQRQSLMNSGYLSPSNTAPTVIKPYPPSSTESSIDFTTATESTSTPTSTT 348
Query: 283 SMDLMGTEHSST 318
S D+ T + T
Sbjct: 349 S-DITSTTTAPT 359
>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
homolog protein 1 protein.
Length = 1722
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 436 GARCPVRRCALRAQCRTSLCSQISP 362
G RC + L+AQC C Q+SP
Sbjct: 1438 GTRCEIEGSCLKAQCVHGECIQLSP 1462
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,779,599
Number of Sequences: 27780
Number of extensions: 457496
Number of successful extensions: 1415
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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