Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16c17
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    29   0.80 
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    28   1.4  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    28   1.9  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    27   2.5  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    27   2.5  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    27   4.3  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    27   4.3  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    26   5.7  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.5  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 327 KEEKQKKRNSLSSTWSDNVIQKDFYVPGEVKFSA 226
           KEE      SL++ W D++  K F V G+++F A
Sbjct: 281 KEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFRA 314


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 4/125 (3%)
 Frame = -1

Query: 696 RLPTPVPSMTKLAEVTFTDRVE-DLPDPVAVGSYLPERKKLLEMINAAAKLLSKSVSQRV 520
           +L TP P +  +        ++  +P  +  G+Y   ++  L    AAAK L    ++ V
Sbjct: 511 QLYTPKPVVANIVPKNAYGNIDLYVPSMLPYGAYHCRKRCAL----AAAKFLEIDYAKAV 566

Query: 519 QKGMDITIGKVTLPHMRNPM---EWGEAVEGLAEAVIDSRVNADSADIRRTGLFLSHRIL 349
             G D    K + P +   +    + EA++ +AE +      A++ ++R+T L L  R++
Sbjct: 567 V-GFDFQ-RKYSKPKLEGVVVSKRYEEAIDLIAEEIDQEEKEAEARNVRKTCLLLWKRLI 624

Query: 348 RSLLI 334
             L I
Sbjct: 625 TGLRI 629


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -1

Query: 519  QKGMDITIGKVTLPHMRNPMEWGEAVEGLAEAVIDSRV 406
            +K +D+ +GK+ L   ++P+     +EGL    +DS +
Sbjct: 1009 EKHVDVVLGKLGLSSSKSPIFVSSILEGLKPLEVDSEI 1046


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -1

Query: 381 RTGLFLSHRILRSLLIDMKEEKQKKRNSLSSTWSDNVIQKDFYVPG 244
           R G   S R   SL +DMK+  +K R SL +    N I      PG
Sbjct: 90  RLGRSTSSRSRNSLNLDMKDPSEKPRRSLPTAAGQNNIGSPPTPPG 135


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 565 QCSSEAVVKISKSESAERYGYNHRESDAPPHE 470
           Q  S+   + S   S  R  +N  E  +PPHE
Sbjct: 135 QIVSDTTTETSNGTSRRRSSHNQHEDSSPPHE 166


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 543 TTASLLH*SSQEVSFSPANSFQPRPGREDLRHDP*TSLQPILSS 674
           +++S+   S+ E   SP+ S   RPG  D  + P TS+ P LS+
Sbjct: 337 SSSSIPKKSNDEAGGSPSKSSPTRPGFNDYVNRP-TSVMPSLSN 379


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = -1

Query: 708 AVKDRLPTPVPS-MTKLAEVTFTDRVEDLPDPVAVGSYLPERKKLLEMINAAAKLLSKSV 532
           A ++ +P   P  + K  E+      E  PDP A+ S LP+  K LE     +K+  + V
Sbjct: 2   ATQNDIPNSTPEDLAKQVEIA-----EKHPDPPAMPSRLPDSLKTLEAKIDTSKITDEEV 56

Query: 531 S--QRVQKGMD 505
           +   R Q+  D
Sbjct: 57  ANVHRFQRACD 67


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 302 TAYHRLGRIMLFRKTF 255
           T YHRLGRI+  RK F
Sbjct: 469 TLYHRLGRILRERKLF 484


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 628 IFDTIRKRHFSQFCHRRHWSGKS 696
           IF  I KRHF  F    H +G+S
Sbjct: 137 IFSKINKRHFDHFSAAFHSTGRS 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,077,915
Number of Sequences: 5004
Number of extensions: 57896
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)