Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16c17
         (828 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR457263-1|CAG33544.1|  547|Homo sapiens REC8L1 protein.               33   1.7  
BC010887-1|AAH10887.1|  547|Homo sapiens REC8 homolog (yeast) pr...    33   1.7  
BC004159-1|AAH04159.1|  547|Homo sapiens REC8 homolog (yeast) pr...    33   1.7  
AK001435-1|BAA91690.1|  547|Homo sapiens protein ( Homo sapiens ...    33   1.7  
AF006264-1|AAD01193.1|  547|Homo sapiens recombination and siste...    33   1.7  

>CR457263-1|CAG33544.1|  547|Homo sapiens REC8L1 protein.
          Length = 547

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 714 MKAVKDRLPTP--VPSMTKLAEVTFTDRVEDLPDPVAVGSYLPER 586
           M +V  RLP+P  +P +  L E    +RVE++P  V      PER
Sbjct: 139 MMSVDPRLPSPFDIPQIRHLLEAAIPERVEEIPPEVPTEPREPER 183


>BC010887-1|AAH10887.1|  547|Homo sapiens REC8 homolog (yeast)
           protein.
          Length = 547

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 714 MKAVKDRLPTP--VPSMTKLAEVTFTDRVEDLPDPVAVGSYLPER 586
           M +V  RLP+P  +P +  L E    +RVE++P  V      PER
Sbjct: 139 MMSVDPRLPSPFDIPQIRHLLEAAIPERVEEIPPEVPTEPREPER 183


>BC004159-1|AAH04159.1|  547|Homo sapiens REC8 homolog (yeast)
           protein.
          Length = 547

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 714 MKAVKDRLPTP--VPSMTKLAEVTFTDRVEDLPDPVAVGSYLPER 586
           M +V  RLP+P  +P +  L E    +RVE++P  V      PER
Sbjct: 139 MMSVDPRLPSPFDIPQIRHLLEAAIPERVEEIPPEVPTEPREPER 183


>AK001435-1|BAA91690.1|  547|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10573 fis, clone NT2RP2003177. ).
          Length = 547

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 714 MKAVKDRLPTP--VPSMTKLAEVTFTDRVEDLPDPVAVGSYLPER 586
           M +V  RLP+P  +P +  L E    +RVE++P  V      PER
Sbjct: 139 MMSVDPRLPSPFDIPQIRHLLEAAIPERVEEIPPEVPTEPREPER 183


>AF006264-1|AAD01193.1|  547|Homo sapiens recombination and sister
           chromatid cohesion protein homolog protein.
          Length = 547

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 714 MKAVKDRLPTP--VPSMTKLAEVTFTDRVEDLPDPVAVGSYLPER 586
           M +V  RLP+P  +P +  L E    +RVE++P  V      PER
Sbjct: 139 MMSVDPRLPSPFDIPQIRHLLEAAIPERVEEIPPEVPTEPREPER 183


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,235,447
Number of Sequences: 237096
Number of extensions: 1950682
Number of successful extensions: 3844
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3844
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10370898348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)