Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16c16
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0352 + 17091637-17091945,17092049-17096617,17096975-170971... 35 0.058
10_08_0728 - 20141785-20142014,20142839-20142923,20143031-201431... 30 1.3
06_03_1236 - 28597863-28598375,28598745-28598890,28599014-285992... 29 2.2
11_04_0216 - 14954047-14956098 29 2.9
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 29 2.9
01_06_1296 + 36088467-36088582,36088697-36088819,36088938-36089607 29 3.8
11_06_0348 - 22561589-22563656,22563788-22564602 28 5.1
02_01_0266 - 1758439-1758599,1758682-1758769,1759363-1759564,175... 28 6.7
06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849 27 8.9
>10_08_0352 + 17091637-17091945,17092049-17096617,17096975-17097187,
17097266-17097494,17097857-17097981
Length = 1814
Score = 34.7 bits (76), Expect = 0.058
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = -1
Query: 253 RSEADSSSTTVHKEEGNLIARSRASGFKFQPNLNSREEIERFRTSVDDISCDKVTQRLGL 74
RS+ +SS G++I + + +K N+N R+ IER S + +S V + +
Sbjct: 1217 RSKEHASSKQKVDTSGSVIEKVKEGRYK-SANINDRKHIERVHDSANKMSTTSVEKSIPE 1275
Query: 73 TEPPVADTSSGQKMAD 26
T P+ T + K D
Sbjct: 1276 TVKPMKATKNNSKATD 1291
>10_08_0728 -
20141785-20142014,20142839-20142923,20143031-20143148,
20143163-20143163,20143229-20143751
Length = 318
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/94 (24%), Positives = 44/94 (46%)
Frame = -1
Query: 301 RELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGFKFQPNLNSREEIERFRT 122
R +AE+ + QT+ + + T + ++ + ++ F+ Q S E+ + R
Sbjct: 187 RYIAELEQKVQILQTEATTLSAQLTLLQRDSSGMATQNNELKFRLQ----SMEQQAQLRD 242
Query: 121 SVDDISCDKVTQRLGLTEPPVADTSSGQKMADLI 20
++++ +V QRL L V DTSS +A I
Sbjct: 243 ALNEALTAEV-QRLKLAANEVCDTSSSSNLAHQI 275
>06_03_1236 -
28597863-28598375,28598745-28598890,28599014-28599247,
28599421-28599688
Length = 386
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Frame = -1
Query: 589 FLVLLTIHLA--------VAKNNNVKTLTESLGREIIEIDNPIKELPPGLEE 458
F VL+ +HL A N++ T SLG I + N IKE PPG+ E
Sbjct: 10 FSVLVALHLCCCHGQAPDAAGNSSDVTAIYSLGDSITDTGNLIKEAPPGMFE 61
>11_04_0216 - 14954047-14956098
Length = 683
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Frame = -1
Query: 331 SSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGFKFQ-PNL 155
+++D + +++E+ + KD + + E + + H N +RS S Q +
Sbjct: 190 AAIDAQISMDQEVLDEIKDGIEEKKVVLEDLNQLSAPHFSSENCSSRSDTSVQDIQRQSF 249
Query: 154 NSREEIERFRTSVDD--ISCDKVTQRLGLTEPPVADTSS 44
S + + F V++ + CD V+ + EPP SS
Sbjct: 250 GSSSDGDGFSDGVEEKRLECDPVSVEIKKCEPPAKSLSS 288
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 29.1 bits (62), Expect = 2.9
Identities = 24/124 (19%), Positives = 49/124 (39%)
Frame = -1
Query: 466 LEEEPSAENDEDGTSATLRPXXXXXXXXXXXXXXXXXXSRAETTNSSVDDEAKIERELAE 287
LE+ S+ + + T+ L A N D E ++ER ++
Sbjct: 441 LEKAQSSVKELESTNGDLNDKIAVLQNEKNSLSSELQQLEASFENLGNDLEQELER-ISI 499
Query: 286 MYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGFKFQPNLNSREEIERFRTSVDDI 107
M+K+N D + S + TV ++ +A + G K + ++I + +V+++
Sbjct: 500 MHKNNEDLELVNSNLQNDLATVQGQKNEAVASTLELGNKLE---EKNQQISNLQEAVENL 556
Query: 106 SCDK 95
K
Sbjct: 557 EAAK 560
>01_06_1296 + 36088467-36088582,36088697-36088819,36088938-36089607
Length = 302
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -2
Query: 489 Q*KNYLRASKRSRRLRMTKTEPAPLCVQERRGEPINPPRLQRLKL*AER 343
Q +YL RS RL +T P L +E +PP ++ + L A +
Sbjct: 15 QASSYLTDKIRSARLALTDVTPTQLMTEEATSGDASPPNVKTMSLIARQ 63
>11_06_0348 - 22561589-22563656,22563788-22564602
Length = 960
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -1
Query: 583 VLLTIHLAVAKNNNVKTLTESLGREIIEIDNPIKELPPGLEEEPSAENDEDGTSAT 416
V L ++ + N+K E++ +E+ + NPI G++ E + +E+ AT
Sbjct: 865 VALCYNVRYMNSPNIKRKVEAVSKEVAKHRNPIDLFIRGMQIEVNQAGEEEAEGAT 920
>02_01_0266 -
1758439-1758599,1758682-1758769,1759363-1759564,
1759664-1759800,1760169-1760268,1760350-1760522,
1760797-1760941,1761018-1761139,1761225-1761470,
1761962-1762182,1762278-1762338,1762409-1762487,
1762572-1762651,1763221-1763292,1763382-1763449,
1763550-1763588,1763828-1763903,1763992-1764006
Length = 694
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -1
Query: 331 SSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIA 194
S + +K+E LA+ + D +D + R E + KEE ++ A
Sbjct: 432 SRKSESSKLESALAKKHNDYNDLRKQRDELQEERKSFWKEEADVTA 477
>06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849
Length = 489
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 394 PPSFLD-AEWRWFRLR--HSQPTAPLRGPEVVLLLGCRFQLSPVP 519
PP F + W FR R H+ APLR + +LL G + SP P
Sbjct: 139 PPRFQELGAWEGFRPRRQHAGVAAPLRFGQRMLLGGAERRWSPPP 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,345,017
Number of Sequences: 37544
Number of extensions: 385290
Number of successful extensions: 1192
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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