Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16c15
(821 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 53 6e-08
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 34 0.021
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 33 0.037
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 28 1.4
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 28 1.4
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 28 1.8
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 28 1.8
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 28 1.8
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 28 1.8
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 28 1.8
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 28 1.8
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 28 1.8
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 28 1.8
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 28 1.8
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 28 1.8
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 28 1.8
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 27 2.4
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 4.3
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc... 27 4.3
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 26 5.6
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 9.8
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 25 9.8
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 25 9.8
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 52.8 bits (121), Expect = 6e-08
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 469 VCRICMTRGR--ERLISPCNCKGSLANVHLTCLERWLNQVGRNHCELC 332
+CR+C G L PC C GS+ VH CL WL + HCELC
Sbjct: 7 ICRVCRCEGAPDSPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELC 54
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 34.3 bits (75), Expect = 0.021
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -2
Query: 739 KGISENVVVADIPN-VHAVTRIQNDTQVLAPLNNNDARTNEIIPNE 605
KGI NVV+ DI N H + ++N + ++NN TN IPN+
Sbjct: 852 KGIESNVVIKDISNQTHEINSVENKAET---VSNNSKITNFDIPND 894
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 33.5 bits (73), Expect = 0.037
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = -2
Query: 514 LVLAQRDSISSIGSNVCRICMT-RGRERLISPCNCKGSLANVHLTCLERWLNQVGRNHCE 338
LVL + S+ G C IC + ER + C H +CL +W + C
Sbjct: 1542 LVLKKNISMHFEGVEECAICYSVLSVERTLPNKRCGTCRHKFHASCLYKWFKSSNSSRCP 1601
Query: 337 LCGFSY 320
LC S+
Sbjct: 1602 LCRSSF 1607
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 589 KTENKLSKLGTDKKKTSGGLSERSDLVLAQRDSISSIGS 473
K++ L L KKK + RS+L + DS+ SIG+
Sbjct: 113 KSQLGLDVLAVQKKKEKSQVEGRSELSQVENDSLESIGN 151
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 393 TFARDPLQLQGEISLSRPRVIQILQTFEPILE---MESLCAKTKSDLSDRP 536
TF DP+Q GE + + +++ + FEP+L+ +E+ S + D P
Sbjct: 294 TFPADPIQEFGEKAYNERELMEEISNFEPLLDDNLLENANEAVNSPVVDAP 344
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 733 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 614
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 733 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 614
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 733 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 614
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 733 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 614
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 733 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 614
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 733 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 614
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 733 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 614
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 733 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 614
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 733 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 614
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 733 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 614
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 733 ISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEII 614
+++ + D N VT NDT++L LNN D R E I
Sbjct: 851 VNQISITDDFKN-QVVTEYTNDTKLLNLLNNEDKRVEENI 889
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 27.5 bits (58), Expect = 2.4
Identities = 21/81 (25%), Positives = 40/81 (49%)
Frame = +3
Query: 456 QILQTFEPILEMESLCAKTKSDLSDRPPEVFFLSVPSFDSLFSVFAVTMTSFGMISLVRA 635
Q+L T PI+E ++D S R + ++++ SFD + + ++ ++ R
Sbjct: 195 QVLAT-NPIMEAFGNAKTIRNDNSSRFGK--YVTI-SFDENLLITGANVNTY-LLERSRV 249
Query: 636 SLLFKGAKTWVSFWILVTACT 698
L KG + + F+ L+T CT
Sbjct: 250 VSLLKGERNYHIFYQLITGCT 270
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 411 LQLQGEISLSRPRVIQILQTFEPILEMESLCAKTKSDL 524
L +QG LS ++ ILQTF P+L M+ L ++ S +
Sbjct: 295 LNMQGGSVLSILQLQSILQTFGPLLIMKPLRSQNVSQI 332
>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 254 QSKPFAGISHRITETAMDFFMAIVLCGYSVTVYLLWKDH 138
+S+P I HR ++ + I+ C S VYL K+H
Sbjct: 131 KSQPLVIIRHRASDEHFEIVNEILSCFKSSVVYLSAKEH 169
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 348 FLPTWFSHLSRQVKCTFAR 404
FLPTW H+SR V F++
Sbjct: 415 FLPTWLRHVSRIVYYMFSK 433
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 9.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 180 QHNCHKKVHCGLCDA 224
+H C K+ H GLC A
Sbjct: 350 EHTCKKRCHSGLCGA 364
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 9.8
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Frame = +1
Query: 499 FVPKPNQIFPIGHQK-----FSSYRYQVSTAYFRF 588
F P+PN IGH K F RY Y RF
Sbjct: 267 FPPEPNGYLHIGHSKAIAVNFGFARYHNGVCYLRF 301
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +3
Query: 573 SLFSVFAVTMTSFGMISLVRASLLF 647
SLF +F+++ + GM+ V ++L+F
Sbjct: 66 SLFGIFSISFSVLGMLPSVASTLVF 90
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,669,373
Number of Sequences: 5004
Number of extensions: 81116
Number of successful extensions: 229
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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