Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16c15
(821 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006624-2|AAF39784.2| 254|Caenorhabditis elegans Hypothetical ... 60 2e-09
Z81037-7|CAB02744.2| 431|Caenorhabditis elegans Hypothetical pr... 57 1e-08
Z70754-2|CAC42308.1| 764|Caenorhabditis elegans Hypothetical pr... 55 5e-08
Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical pr... 55 5e-08
AF164113-1|AAD45535.1| 810|Caenorhabditis elegans zinc finger p... 55 5e-08
AL032647-1|CAA21688.2| 470|Caenorhabditis elegans Hypothetical ... 51 1e-06
Z36948-1|CAA85409.1| 180|Caenorhabditis elegans Hypothetical pr... 50 3e-06
AC006644-6|AAZ91358.1| 958|Caenorhabditis elegans Hypothetical ... 49 5e-06
Z49968-3|CAA90260.1| 189|Caenorhabditis elegans Hypothetical pr... 33 0.19
U97007-3|AAB52299.1| 374|Caenorhabditis elegans Hypothetical pr... 33 0.25
AF036699-2|AAB88361.2| 109|Caenorhabditis elegans Hypothetical ... 32 0.57
U53141-3|AAA96105.3| 596|Caenorhabditis elegans Hypothetical pr... 31 1.00
AM748821-1|CAO72175.2| 596|Caenorhabditis elegans hexosaminidas... 31 1.00
U46753-9|AAA85765.1| 226|Caenorhabditis elegans Hypothetical pr... 30 1.7
AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ... 30 1.7
AC006607-7|AAL00855.1| 789|Caenorhabditis elegans Hypothetical ... 30 2.3
Z67990-7|CAA91938.1| 406|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z70205-4|CAA94115.2| 528|Caenorhabditis elegans Hypothetical pr... 28 9.3
U88310-2|AAB42338.2| 635|Caenorhabditis elegans Hypothetical pr... 28 9.3
AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical... 28 9.3
AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical... 28 9.3
>AC006624-2|AAF39784.2| 254|Caenorhabditis elegans Hypothetical
protein C53D5.2 protein.
Length = 254
Score = 60.1 bits (139), Expect = 2e-09
Identities = 30/66 (45%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Frame = -2
Query: 493 SISSIGSNVCRICMTRGRER---LISPCNCKGSLANVHLTCLERWLNQVGRN-----HCE 338
S+ S +N+CRIC T R LISPC C G+L VH C+ RWL R CE
Sbjct: 8 SLQSASANMCRICHTSTSTRSNPLISPCRCSGTLLFVHKACVVRWLEMSTRKMVPSPRCE 67
Query: 337 LCGFSY 320
LCG+ Y
Sbjct: 68 LCGYDY 73
>Z81037-7|CAB02744.2| 431|Caenorhabditis elegans Hypothetical
protein C17E4.3 protein.
Length = 431
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Frame = -2
Query: 496 DSISSIGSNVCRICMT----------RGRERLISPCNCKGSLANVHLTCLERWLNQVGRN 347
D +S+G VCRICM + E LISPC C G++ H +CLE WL
Sbjct: 3 DFNASLGPAVCRICMCGETSIPYLGQQAGEPLISPCKCSGTMGLFHRSCLEHWLTLTSTT 62
Query: 346 HCELCGFSY 320
+CE+C F++
Sbjct: 63 NCEICKFAF 71
>Z70754-2|CAC42308.1| 764|Caenorhabditis elegans Hypothetical
protein F58E6.1b protein.
Length = 764
Score = 55.2 bits (127), Expect = 5e-08
Identities = 21/65 (32%), Positives = 37/65 (56%)
Frame = -2
Query: 514 LVLAQRDSISSIGSNVCRICMTRGRERLISPCNCKGSLANVHLTCLERWLNQVGRNHCEL 335
L+ + +S +S +CRIC + ++ PC+C G++ +VH CL +W+N + CE+
Sbjct: 36 LLASFSESTTSGSRRICRICQMHEGD-MVRPCDCAGTMGDVHEECLTKWVNMSNKKTCEI 94
Query: 334 CGFSY 320
C Y
Sbjct: 95 CKSEY 99
>Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical
protein F58E6.1a protein.
Length = 966
Score = 55.2 bits (127), Expect = 5e-08
Identities = 21/65 (32%), Positives = 37/65 (56%)
Frame = -2
Query: 514 LVLAQRDSISSIGSNVCRICMTRGRERLISPCNCKGSLANVHLTCLERWLNQVGRNHCEL 335
L+ + +S +S +CRIC + ++ PC+C G++ +VH CL +W+N + CE+
Sbjct: 36 LLASFSESTTSGSRRICRICQMHEGD-MVRPCDCAGTMGDVHEECLTKWVNMSNKKTCEI 94
Query: 334 CGFSY 320
C Y
Sbjct: 95 CKSEY 99
>AF164113-1|AAD45535.1| 810|Caenorhabditis elegans zinc finger
protein STAT-B protein.
Length = 810
Score = 55.2 bits (127), Expect = 5e-08
Identities = 21/65 (32%), Positives = 37/65 (56%)
Frame = -2
Query: 514 LVLAQRDSISSIGSNVCRICMTRGRERLISPCNCKGSLANVHLTCLERWLNQVGRNHCEL 335
L+ + +S +S +CRIC + ++ PC+C G++ +VH CL +W+N + CE+
Sbjct: 82 LLASFSESTTSGSRRICRICQMHEGD-MVRPCDCAGTMGDVHEECLTKWVNMSNKKTCEI 140
Query: 334 CGFSY 320
C Y
Sbjct: 141 CKSEY 145
>AL032647-1|CAA21688.2| 470|Caenorhabditis elegans Hypothetical
protein Y57A10B.1 protein.
Length = 470
Score = 50.8 bits (116), Expect = 1e-06
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Frame = -2
Query: 508 LAQRDSISSIGSNVCRICMTR-GRERLISPCNCKGSLANVHLTCLERWLNQVGRN-H--- 344
LA+ D + +C C + LISPC C GSL VH++CL WL+ R H
Sbjct: 183 LARSDMSNEPLCRICHCCWPPDSNDPLISPCRCSGSLQYVHVSCLMHWLDISSRKLHRPA 242
Query: 343 -CELCGFSYPAIRTPRY 296
CELC + Y R +Y
Sbjct: 243 ICELCLYKYRRRRVLKY 259
>Z36948-1|CAA85409.1| 180|Caenorhabditis elegans Hypothetical
protein D2089.2 protein.
Length = 180
Score = 49.6 bits (113), Expect = 3e-06
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = -2
Query: 469 VCRICMTR--GRERLISPCNCKGSLANVHLTCLERWLNQVGRNHCELC 332
+CRIC + LI PC+C G++A VH CLE+W+ C +C
Sbjct: 24 ICRICFDNDTSSDSLIKPCSCSGTVAYVHNGCLEQWVRTTSNIQCTIC 71
>AC006644-6|AAZ91358.1| 958|Caenorhabditis elegans Hypothetical
protein F55A3.1 protein.
Length = 958
Score = 48.8 bits (111), Expect = 5e-06
Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -2
Query: 469 VCRICMTRGRE-RLISPCNCKGSLANVHLTCLERWLNQVGRNHCELCGFSY 320
+CR+C RG E L PC C GS+ VH CL WL + CELC Y
Sbjct: 52 MCRVC--RGNEGSLYYPCLCTGSIKYVHQECLVEWLKYSKKEVCELCNHKY 100
>Z49968-3|CAA90260.1| 189|Caenorhabditis elegans Hypothetical
protein M110.3 protein.
Length = 189
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = -2
Query: 466 CRICMTRGRERLIS---PCNCKGSLANVHLTCLERWLNQVGRNHCELC 332
C+ C + +S PC C+GS+ VH CL W ++ +C
Sbjct: 16 CKFCFGTESDNALSFVHPCRCRGSIHWVHHQCLAMWFSKANAVQQVMC 63
>U97007-3|AAB52299.1| 374|Caenorhabditis elegans Hypothetical
protein ZC196.9 protein.
Length = 374
Score = 33.1 bits (72), Expect = 0.25
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +3
Query: 519 DLSDRPPEVFFLSVPSFDSLFSVFAVTMTSFGMISLVRASLLFKGAKTWVSFWIL--VTA 692
D+SD + SV S LF V + T M LV + LL++ K+ FW L +T
Sbjct: 58 DISDSEKNWLYYSVVS---LFVVSTIGATILTMSFLVLSILLWRHFKSMRFFWFLTQLTT 114
Query: 693 CTFGISATTTFSLIP 737
F ISA F IP
Sbjct: 115 SAFVISAANLFINIP 129
>AF036699-2|AAB88361.2| 109|Caenorhabditis elegans Hypothetical
protein F58F6.5 protein.
Length = 109
Score = 31.9 bits (69), Expect = 0.57
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 573 SLFSVFAVTMTSFGMISLVRASLLFKGAKTWVSFWIL--VTACTFGISATTTFSLIP 737
SLF V V T + LV + LL++ K+ FW L +T F ISA+ F IP
Sbjct: 31 SLFVVSTVVATILTLSFLVLSILLWRNFKSMRFFWFLTQLTTSAFIISASNLFINIP 87
>U53141-3|AAA96105.3| 596|Caenorhabditis elegans Hypothetical
protein C14C11.3 protein.
Length = 596
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 437 FPSASHTNSANV*TNTRNGVSLCQNQIRSFR*ATRSFLLIGTKFRQLIFGFC 592
+PSAS + + TN RN + QNQ R F+ + ++ G + + G C
Sbjct: 367 YPSASTSEVRHYETNNRNWIRTKQNQERKFKNGFQGIIVTGWQRYDHLAGLC 418
>AM748821-1|CAO72175.2| 596|Caenorhabditis elegans hexosaminidase
protein.
Length = 596
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 437 FPSASHTNSANV*TNTRNGVSLCQNQIRSFR*ATRSFLLIGTKFRQLIFGFC 592
+PSAS + + TN RN + QNQ R F+ + ++ G + + G C
Sbjct: 367 YPSASTSEVRHYETNNRNWIRTKQNQERKFKNGFQGIIVTGWQRYDHLAGLC 418
>U46753-9|AAA85765.1| 226|Caenorhabditis elegans Hypothetical
protein C34F11.1 protein.
Length = 226
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = -2
Query: 502 QRDSISSIGSNVCRICMTRGRERLISPCNCKGSLANVHLT-CLERWLNQVGRNHCELCGF 326
QR S++ ++ C IC E+ + P C L + C+++W + C LC F
Sbjct: 143 QRHRGSALQTSECTICF----EKPVDPRGCPKCLKVIGCKKCVKKWFDTSASKACPLCRF 198
Query: 325 SYPAIR-TPRYTVLQALRLWFGNPRNR 248
+ R P + L + +NR
Sbjct: 199 EWKLHRDNPDVVKISTLEVLKRQKQNR 225
>AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical
protein Y54E10A.11 protein.
Length = 1446
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Frame = -2
Query: 478 GSNVCRICMTRGRERL--ISPCNCKGSLANVHLTCLERWLNQVGRNHCELC 332
G C ICM ++ + CK H CL +W ++ C LC
Sbjct: 1391 GVEDCTICMMTVHQQTHQLPKIKCKQCKNKFHSNCLYKWFESSNQSTCPLC 1441
>AC006607-7|AAL00855.1| 789|Caenorhabditis elegans Hypothetical
protein C09E7.9 protein.
Length = 789
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -2
Query: 532 LSERSDLVLAQRDSISSIGSNVCRIC---MTRGRERLISPCNCKGSLANVHLTCLERWLN 362
L + D+V A S + + C IC MT +E + C C+ HL C +WLN
Sbjct: 714 LFSQPDIVTASVPS-TELDDTECAICLDEMTNFKETI--KCECR---RRFHLKCATKWLN 767
Query: 361 QVGRNHCELC 332
+ + C C
Sbjct: 768 E--KRECPTC 775
>Z67990-7|CAA91938.1| 406|Caenorhabditis elegans Hypothetical
protein F02D10.7 protein.
Length = 406
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 415 CKGSLANVHLTCLERWLNQVGRNHCELCGF 326
C G + + H C L + ++HCE C F
Sbjct: 81 CSGCVHSFHRACFPMKLTEESKSHCESCVF 110
>Z70205-4|CAA94115.2| 528|Caenorhabditis elegans Hypothetical
protein C11H1.5 protein.
Length = 528
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 151 CGKIITSCGTDGGEPMSMSDYY*PRIRTLCLSY 53
C KII + +DG +P + +Y PR ++C+ Y
Sbjct: 451 CCKIIKNTCSDGIDPKFVKRWYRPRGSSVCVPY 483
>U88310-2|AAB42338.2| 635|Caenorhabditis elegans Hypothetical
protein C24G7.2 protein.
Length = 635
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 642 LFKGAKTWVSFWILVTACTFGISATTTFSL 731
+F+G + FW+++ +C+ G+ T F L
Sbjct: 95 IFQGKRWATLFWLIMVSCSLGLLITQVFIL 124
>AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical
protein C09E7.8b protein.
Length = 1080
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -2
Query: 532 LSERSDLVLAQRDSISSIGSNVCRIC---MTRGRERLISPCNCKGSLANVHLTCLERWLN 362
L + ++V A S + + C IC MT +E + C C+ HL C +WLN
Sbjct: 1005 LFSQPNIVTASITS-TELDDTECAICLDEMTNFKETI--KCQCR---RRFHLECATKWLN 1058
Query: 361 QVGRNHCELC 332
+ + C C
Sbjct: 1059 E--KRECPTC 1066
>AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical
protein C09E7.8a protein.
Length = 1114
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -2
Query: 532 LSERSDLVLAQRDSISSIGSNVCRIC---MTRGRERLISPCNCKGSLANVHLTCLERWLN 362
L + ++V A S + + C IC MT +E + C C+ HL C +WLN
Sbjct: 1039 LFSQPNIVTASITS-TELDDTECAICLDEMTNFKETI--KCQCR---RRFHLECATKWLN 1092
Query: 361 QVGRNHCELC 332
+ + C C
Sbjct: 1093 E--KRECPTC 1100
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,588,581
Number of Sequences: 27780
Number of extensions: 474123
Number of successful extensions: 1280
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -