Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16c15
         (821 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   3.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.4  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   4.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   4.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = +3

Query: 660 TWVSFWILVTAC----TFGISATTTFSLIPLKHEA 752
           +WVSFWI   A     T G+++  T S    K +A
Sbjct: 262 SWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQA 296


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +3

Query: 660 TWVSFWI--LVTACTFGISATTTFSL 731
           +WVSFWI    T+   G+  TT  +L
Sbjct: 262 SWVSFWIHREATSDRVGLGITTVLTL 287


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +1

Query: 355 PLGSAIFQDKSNVRLPGILCSCKVRLAFPVRESYKFCKRLNQYSKW 492
           PLG  +++DK  + LP       V L    + S     +L  Y  W
Sbjct: 189 PLGLEVWRDKVFITLPKWKDGIPVTLTTVPKHSKTKSPKLRPYPNW 234


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 141 SLHHVEQMEESQCQ 100
           SLHHV    ES C+
Sbjct: 439 SLHHVRSSRESSCE 452


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 671 VLDSGNSVYIWYISNDY 721
           + +  N+ YIW +SN Y
Sbjct: 364 IYERQNNEYIWIVSNKY 380


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 12/48 (25%), Positives = 19/48 (39%)
 Frame = +1

Query: 355 PLGSAIFQDKSNVRLPGILCSCKVRLAFPVRESYKFCKRLNQYSKWSL 498
           P G  I+ DK  + +P         L F ++       +LN Y  W +
Sbjct: 53  PNGMQIWNDKVFITIPRWKNGVPSNLNFFLKNDESESPKLNPYPNWEM 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,728
Number of Sequences: 438
Number of extensions: 5901
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)