Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16c13
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 28 0.91
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 28 1.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 6.4
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr... 25 6.4
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 6.4
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 25 8.5
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 25 8.5
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 25 8.5
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa... 25 8.5
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 28.3 bits (60), Expect = 0.91
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 256 LKQEEGECPTPSLCVEKLKNPAHAGEITKCLPGKFIN-VTS 137
++ E+G P +E L+ A GE LPG F+N +TS
Sbjct: 1501 VRSEQGSGPVTDFAIELLRT-AVGGENPMALPGNFVNSITS 1540
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 27.9 bits (59), Expect = 1.2
Identities = 21/77 (27%), Positives = 33/77 (42%)
Frame = -3
Query: 355 NSKMTKNVAKIDVKSCVKAEPPHPCDPIVPCDPLKQEEGECPTPSLCVEKLKNPAHAGEI 176
N+ +T N A+ VKS + + P P D V K +E EKL++ G I
Sbjct: 328 NANLTLNEAQQSVKSLTERQGPRPSDNGVQDLQEKMQEVNAEKLQHENEKLESSHELGSI 387
Query: 175 TKCLPGKFINVTSCAKE 125
K I++ + +E
Sbjct: 388 RTLKAQKLIDLDNIKRE 404
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 6.4
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Frame = -3
Query: 454 KLQDGKPLMPEDRNHDSCACSDQKNQEDRHR*TNSKMTKNVAKIDVKSCVKAEPPHPCD- 278
K+Q P + HDS S ++E+ + + +K+ A + K P HP
Sbjct: 1630 KMQPPAPSPLQPSGHDSDNWSQHGDEEEEDSEDDIRSSKDAAALAAKLFGGMAPAHPVST 1689
Query: 277 PIVPCDPLKQEEGECPTP 224
P V + PTP
Sbjct: 1690 PPVRPQSAAPPQMSAPTP 1707
>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 25.4 bits (53), Expect = 6.4
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -3
Query: 418 RNHDSCACSDQKNQEDRHR*TNSKMTKNVAKIDVKSCVKAE-PPHPCDPIVPCDPLKQEE 242
RNH SC Q+ Q+ +R T ++ K AK++ + E P+ + P P K
Sbjct: 43 RNHTSCMTEAQRYQKGLYRPTKKELKK--AKMNGNAVNSKELSPNTDNQNTPAGPTKHSL 100
Query: 241 GE 236
E
Sbjct: 101 DE 102
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 597 QN*TAIKTASKNGTVDFTKCQT 532
QN ++ T SKN + DFTK Q+
Sbjct: 258 QNNVSLSTNSKNYSTDFTKIQS 279
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 25.0 bits (52), Expect = 8.5
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Frame = -3
Query: 544 KMSDNNNS-------CTQNCKT-QKNKCQPCLGPVTVQKLQDGKPLMPEDRNHDSCACSD 389
K+ D NNS QN + Q + + L P+ K Q+ K L SD
Sbjct: 105 KIEDQNNSLEKTEFIALQNANSLQDTQAKLRLDPLLAIKQQEQKQLQTLMEKRKYSLDSD 164
Query: 388 QKNQEDRHR 362
+K++E RHR
Sbjct: 165 RKSKERRHR 173
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 296 FGFHTRFDVDFCNVFSHFAVCSSVSVFLIFLVRTSAGVVVPVFRHQ 433
FG T F + ++ CS+ ++ L+R+S G P+F Q
Sbjct: 426 FGIITIFQQTINYIIDCYSGCSASAIAANTLLRSSFGAAFPLFTTQ 471
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 323 DFCNV-FSHFAVCSSVSVFLIFLVRTSAGVVVPVFRHQRL 439
+ C++ F H+A S+ + LI LVR+ P F+ QRL
Sbjct: 432 ELCSIPFKHYAATSAAAARLIPLVRSQ----YPDFKSQRL 467
>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = -1
Query: 198 TLHMLVK*QNVYQGNSSTLLPAPKRIHHIPATRSPAIRTLQRGAPVRTLHCVCSESRTPL 19
+L ++K V+ G + + A K + A + + A V+ + +C+ES+TPL
Sbjct: 35 SLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAESQTPL 94
Query: 18 QK 13
K
Sbjct: 95 VK 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,259
Number of Sequences: 5004
Number of extensions: 60612
Number of successful extensions: 189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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