Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16c12
         (846 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0795 + 27783813-27785246,27785339-27785591,27786377-27786639     32   0.66 
01_05_0510 - 22816607-22816916,22817005-22817177,22817341-228176...    30   2.7  
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926...    30   2.7  
02_05_0178 - 26513403-26513983,26515295-26515949                       29   4.7  
08_02_0199 - 14160881-14161054,14161151-14161306,14161802-141619...    28   8.1  

>03_05_0795 + 27783813-27785246,27785339-27785591,27786377-27786639
          Length = 649

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 713 KFLLMNGVRFWGLHFEISRQLARYPRNLLSATLALRVAAVCA 588
           ++L + G   WG   E++RQ     RN+L   LA  VAA  A
Sbjct: 338 RYLFLTGANLWGA-VEMARQECHAERNMLGLDLACMVAATAA 378


>01_05_0510 -
           22816607-22816916,22817005-22817177,22817341-22817607,
           22817951-22818393,22818474-22818635,22820991-22821414,
           22823177-22823227
          Length = 609

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/53 (24%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +1

Query: 571 TPFSNVAQTAATRSASVALSRLRGYRAS--WREISKCKPQNRTPFISKNFPIK 723
           TP++     +++ S+S A++ L    +S  W E+ +  P  ++ +  +N+PI+
Sbjct: 79  TPYAAALPPSSSSSSSAAVAMLASSSSSSTWSELQRAMPAAQSSWSQRNYPIQ 131


>01_01_1165 -
           9267891-9268145,9268395-9268510,9268991-9269127,
           9269645-9269808,9269892-9269972,9270783-9270962,
           9271489-9271929,9273234-9273344,9274355-9274463,
           9274618-9274643,9274823-9274903,9275013-9275211,
           9275374-9275449,9275553-9275769,9276117-9276155,
           9276684-9276783,9276962-9277084,9277171-9277895
          Length = 1059

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 533 LLKDFTHRLLISRLLFQMLHKLRQHVALVSRSVDCAGTGQVGGR 664
           + KD T +L    LLF+    ++ H+A  +     AG G+  GR
Sbjct: 174 IFKDTTLQLREKNLLFRFFKLVQAHIAASAAGAAAAGEGEASGR 217


>02_05_0178 - 26513403-26513983,26515295-26515949
          Length = 411

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 739 INKNNILLGNFY**TVFDFGVYILKSPA 656
           I  NNILL   Y   + DFG+Y+L +PA
Sbjct: 257 IKTNNILLDANYECKISDFGLYLLLNPA 284


>08_02_0199 -
           14160881-14161054,14161151-14161306,14161802-14161921,
           14162046-14162143,14162969-14163041,14164472-14164619,
           14165108-14165232,14165611-14165652,14165757-14166074,
           14166633-14167559,14167584-14167852,14167946-14168255,
           14169281-14169465,14170795-14170901,14171320-14171486
          Length = 1072

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 648 PVPAQSTERDTSATCCRSLCNI 583
           P P  ST RD SA  C+  C I
Sbjct: 83  PKPLMSTRRDDSAITCKGFCTI 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,750,670
Number of Sequences: 37544
Number of extensions: 319378
Number of successful extensions: 658
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)