Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16c12
         (846 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    25   0.88 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.5  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.2  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   8.2  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 445 PVTKSNTSDSV*QKHNYCKNNSYKNFY 365
           P   S+ S+S    +NY  NN+YK  Y
Sbjct: 301 PKIISSLSNSCNYSNNYYNNNNYKKLY 327


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 518 RTYRQL--LKDFTHRLLISRLLFQMLHKLRQHVALVSRSVDC 637
           +TYR+L   K  T RLL S L   + ++LR    + ++  DC
Sbjct: 368 QTYRELDGEKQKTDRLLYSVLPISVANELRHSRPVPAKKYDC 409


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 518 RTYRQL--LKDFTHRLLISRLLFQMLHKLRQHVALVSRSVDC 637
           +TYR+L   K  T RLL S L   + ++LR    + ++  DC
Sbjct: 368 QTYRELDGEKQKTDRLLYSVLPISVANELRHSRPVPAKKYDC 409


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 274 YYESLYKFLYCKTQNTE 324
           Y + L++ L+C  +NTE
Sbjct: 300 YIDFLFQVLHCNMENTE 316


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 298 EIYTVIHNIHRRSGI*YYFRYNIKLYFK 215
           +I + + N ++ S    Y  YN KLY+K
Sbjct: 80  KIISSLSNNYKYSNYNNYNNYNKKLYYK 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,031
Number of Sequences: 438
Number of extensions: 5109
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)